Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   L3X15_RS05570 Genome accession   NZ_CP091423
Coordinates   1131260..1132486 (-) Length   408 a.a.
NCBI ID   WP_002934974.1    Uniprot ID   G7SE29
Organism   Streptococcus suis strain LSM29     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1126260..1137486
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3X15_RS05545 (L3X15_05545) - 1127060..1127242 (+) 183 WP_002934978.1 4-oxalocrotonate tautomerase -
  L3X15_RS05550 (L3X15_05550) lepA 1127292..1129124 (-) 1833 WP_024383525.1 translation elongation factor 4 -
  L3X15_RS05555 (L3X15_05555) - 1129406..1130113 (-) 708 WP_237374664.1 HIRAN domain-containing protein -
  L3X15_RS05560 (L3X15_05560) ndk 1130183..1130596 (-) 414 WP_002934976.1 nucleoside-diphosphate kinase -
  L3X15_RS05565 (L3X15_05565) yihA 1130619..1131206 (-) 588 WP_237374665.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  L3X15_RS05570 (L3X15_05570) clpX 1131260..1132486 (-) 1227 WP_002934974.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  L3X15_RS05575 (L3X15_05575) - 1132684..1133196 (-) 513 WP_105140179.1 dihydrofolate reductase -
  L3X15_RS05580 (L3X15_05580) - 1133371..1134210 (-) 840 WP_105095072.1 thymidylate synthase -
  L3X15_RS05585 (L3X15_05585) - 1134263..1134565 (-) 303 WP_105154152.1 hypothetical protein -
  L3X15_RS05590 (L3X15_05590) - 1134577..1134855 (-) 279 WP_012775087.1 hypothetical protein -
  L3X15_RS05595 (L3X15_05595) - 1134982..1135941 (-) 960 WP_023370402.1 ROK family glucokinase -
  L3X15_RS05600 (L3X15_05600) - 1136037..1136372 (-) 336 WP_023370404.1 hypothetical protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45318.84 Da        Isoelectric Point: 4.6382

>NTDB_id=651062 L3X15_RS05570 WP_002934974.1 1131260..1132486(-) (clpX) [Streptococcus suis strain LSM29]
MAVKHTHELIYCSFCGKNQEEVKKIIAGNNVFICNECVELAQEIIREELAEEVLTDLADTPKPQELLNILNNYVIGQDRA
KRALAVAVYNHYKRINFQDSRDENDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENIL
LKLLQAADFNIDRAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIHVDTKN
ILFIVGGAFDGIEEIVKQRLGEKIIGFGHNNRAIDEKESYMQHIIADDIQKFGIIPELIGRLPVFAALDQLTTEDLVRIL
TEPKNALVKQYQTLLSYDDVELDFDEDALLAIAEKAIERKTGARGLRSIIEETMLDVMFEVPGQDNVKRVRVTKAAVDGK
EKPLLETA

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=651062 L3X15_RS05570 WP_002934974.1 1131260..1132486(-) (clpX) [Streptococcus suis strain LSM29]
ATGGCTGTTAAGCATACCCATGAGTTGATTTATTGCTCATTTTGTGGAAAAAATCAAGAAGAAGTTAAAAAAATTATTGC
AGGAAACAATGTTTTCATTTGTAATGAGTGTGTGGAGTTAGCTCAAGAAATCATTCGTGAAGAACTAGCAGAAGAAGTGT
TGACAGACTTGGCCGATACGCCAAAGCCACAAGAATTACTCAATATCCTGAACAACTATGTCATCGGACAGGATCGTGCT
AAGCGTGCCTTGGCAGTTGCTGTCTACAACCACTACAAACGGATCAATTTCCAAGATAGCCGTGATGAGAACGATGTTGA
TTTACAAAAATCAAATATCCTTATGATTGGTCCGACTGGTTCAGGAAAAACCTTCCTAGCACAGACCTTGGCTAAAAGTT
TGAATGTCCCGTTTGCTATTGCTGATGCGACCGCTCTTACTGAGGCGGGTTATGTGGGTGAAGACGTAGAAAATATCCTC
CTCAAACTTTTGCAGGCTGCAGACTTTAACATCGACCGTGCAGAAAGAGGAATTATCTATGTGGATGAAATTGATAAAAT
TGCCAAAAAAGGTGAAAATGTGTCCATTACCCGCGATGTATCTGGTGAAGGTGTCCAGCAAGCTCTCCTAAAAATTATCG
AGGGAACTGTGGCCAGCGTACCACCACAAGGCGGACGCAAACATCCAAACCAAGAAATGATTCACGTGGACACCAAAAAT
ATCCTGTTTATCGTTGGCGGTGCATTTGATGGTATCGAAGAAATCGTCAAACAGCGTCTCGGTGAAAAAATCATCGGTTT
TGGTCATAATAATCGTGCTATTGATGAAAAAGAATCATACATGCAACATATCATTGCAGACGATATTCAAAAATTCGGTA
TCATTCCAGAGTTGATTGGTCGCTTGCCTGTATTCGCAGCTTTGGACCAATTGACAACAGAGGATTTGGTACGCATTTTG
ACGGAACCGAAGAATGCTCTTGTAAAACAATACCAGACACTCTTGTCTTATGATGACGTGGAGCTTGACTTTGATGAGGA
CGCCTTGTTAGCAATTGCAGAAAAGGCAATTGAACGTAAGACTGGTGCTCGTGGACTTCGTTCCATCATTGAAGAAACGA
TGTTGGATGTCATGTTTGAGGTGCCAGGCCAAGATAACGTTAAACGCGTTCGTGTAACAAAAGCAGCAGTAGACGGTAAG
GAAAAACCTTTACTAGAAACTGCTTAA

Domains

Predicted by InterproScan.

ClpX C4-type zinc finger (zf-C4_ClpX)

(11-47)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(311-389)

AAA domain (Cdc48 subfamily) (AAA_2)

(109-304)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G7SE29

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

83.13

100

0.833
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.209

98.529

0.574