Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHA62_RS37065 Genome accession   NZ_CP107998
Coordinates   8267001..8267624 (-) Length   207 a.a.
NCBI ID   WP_328684505.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00343     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 8262001..8272624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA62_RS37045 (OHA62_37020) - 8262438..8263667 (-) 1230 WP_328684501.1 DUF349 domain-containing protein -
  OHA62_RS37050 (OHA62_37025) - 8263803..8264630 (-) 828 WP_328684502.1 peptidylprolyl isomerase -
  OHA62_RS37055 (OHA62_37030) - 8264810..8265520 (+) 711 WP_328684503.1 MBL fold metallo-hydrolase -
  OHA62_RS37060 (OHA62_37035) hisS 8265533..8266795 (+) 1263 WP_328684504.1 histidine--tRNA ligase -
  OHA62_RS37065 (OHA62_37040) vraR 8267001..8267624 (-) 624 WP_328684505.1 response regulator transcription factor Regulator
  OHA62_RS37070 (OHA62_37045) - 8267621..8268856 (-) 1236 WP_328684506.1 sensor histidine kinase -
  OHA62_RS37075 (OHA62_37050) - 8268853..8269704 (-) 852 WP_328684507.1 ABC transporter permease -
  OHA62_RS37080 (OHA62_37055) - 8269701..8270567 (-) 867 WP_328684508.1 ABC transporter ATP-binding protein -
  OHA62_RS37085 (OHA62_37060) - 8270710..8271366 (+) 657 WP_033282274.1 vitamin K epoxide reductase family protein -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 22166.58 Da        Isoelectric Point: 5.4060

>NTDB_id=651037 OHA62_RS37065 WP_328684505.1 8267001..8267624(-) (vraR) [Streptomyces sp. NBC_00343]
MIRIILADDHPVVREGLRAMLSAEPDLDVVADASSGPQAEALAAELRPDIVLMDLRMPGGGGVDSIVRMSAAGLACRVIV
LTTYETDRDILRAVEAGAAGYLLKDLPRGELADAVRAAARGETVLAPSVAARLVDQLRTRPERPRLSERETAVLRLVAEG
CTNAEIGRRLYIGESTVKTHLLRVFGKLGVDDRTAAVTSAMRYGLLD

Nucleotide


Download         Length: 624 bp        

>NTDB_id=651037 OHA62_RS37065 WP_328684505.1 8267001..8267624(-) (vraR) [Streptomyces sp. NBC_00343]
ATGATCCGGATCATCCTGGCCGACGACCATCCCGTCGTACGGGAGGGCCTGCGCGCCATGCTCAGCGCCGAACCGGACCT
CGATGTCGTCGCCGACGCGTCGAGCGGGCCGCAGGCGGAGGCGCTGGCCGCCGAGTTGAGGCCGGACATCGTGCTGATGG
ACCTGCGGATGCCGGGCGGTGGCGGTGTCGACTCCATCGTGCGGATGAGTGCGGCCGGGTTGGCGTGCCGGGTGATCGTC
CTCACCACGTATGAGACCGACCGGGACATTCTGCGAGCCGTGGAGGCGGGGGCGGCGGGTTACCTGCTGAAGGATCTGCC
GCGGGGTGAGCTCGCGGACGCGGTACGGGCCGCCGCGCGGGGCGAGACCGTGTTGGCGCCGTCTGTGGCCGCGCGGTTGG
TGGACCAGTTGCGGACCAGGCCGGAGCGGCCTCGGTTGTCCGAGCGGGAGACGGCTGTGCTGCGGTTGGTGGCAGAAGGG
TGCACCAACGCGGAGATCGGGCGGCGGTTGTACATCGGGGAGTCGACGGTGAAGACCCATCTGCTGCGGGTCTTCGGGAA
GTTGGGGGTGGATGACCGGACCGCGGCTGTGACGAGTGCGATGCGGTACGGGTTGCTGGACTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(146-200)

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.35

99.517

0.382
  degU Bacillus subtilis subsp. subtilis str. 168

33.929

100

0.367