Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHA62_RS35170 Genome accession   NZ_CP107998
Coordinates   7857814..7858455 (+) Length   213 a.a.
NCBI ID   WP_328684197.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00343     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 7852814..7863455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA62_RS35150 (OHA62_35120) - 7853439..7854203 (-) 765 WP_328684193.1 transglycosylase SLT domain-containing protein -
  OHA62_RS35155 (OHA62_35125) - 7854503..7855798 (-) 1296 WP_328684194.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase -
  OHA62_RS35160 (OHA62_35130) - 7855795..7856490 (-) 696 WP_328684195.1 SDR family NAD(P)-dependent oxidoreductase -
  OHA62_RS35165 (OHA62_35135) - 7856676..7857821 (+) 1146 WP_328684196.1 GAF domain-containing sensor histidine kinase -
  OHA62_RS35170 (OHA62_35140) vraR 7857814..7858455 (+) 642 WP_328684197.1 response regulator transcription factor Regulator
  OHA62_RS35175 (OHA62_35145) - 7858642..7858881 (+) 240 WP_328684198.1 chaplin -
  OHA62_RS35180 (OHA62_35150) - 7859096..7859335 (+) 240 WP_328684199.1 chaplin family protein -
  OHA62_RS35185 (OHA62_35155) - 7859546..7860334 (-) 789 WP_318015465.1 hypothetical protein -
  OHA62_RS35190 (OHA62_35160) - 7860467..7861258 (+) 792 WP_328684200.1 ABC transporter ATP-binding protein -
  OHA62_RS35195 (OHA62_35165) - 7861335..7861769 (+) 435 WP_328684201.1 NfeD family protein -
  OHA62_RS35200 (OHA62_35170) - 7861944..7862909 (+) 966 WP_033286429.1 SPFH domain-containing protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23126.54 Da        Isoelectric Point: 5.3843

>NTDB_id=651033 OHA62_RS35170 WP_328684197.1 7857814..7858455(+) (vraR) [Streptomyces sp. NBC_00343]
MAEPIKVLIVDDHQVVRRGLRTFLEVQDDIEVVGEAADGAEGVARTEELKPDVVLMDVKMPGMDGIDALRRLRELDLPAR
VLIVTSFTEQRTVIPALRAGAAGYVYKDVDPDALAGAIRSVHAGHILLQPEVAGVLLSQEESNSGQGRGGSLTEREREVL
GLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALFAVRHGLTR

Nucleotide


Download         Length: 642 bp        

>NTDB_id=651033 OHA62_RS35170 WP_328684197.1 7857814..7858455(+) (vraR) [Streptomyces sp. NBC_00343]
GTGGCTGAACCGATCAAGGTGCTCATCGTCGACGACCACCAGGTCGTCCGCCGGGGCCTGCGCACCTTCCTGGAGGTGCA
GGACGACATCGAGGTCGTCGGCGAGGCGGCCGACGGCGCCGAAGGAGTCGCCCGCACCGAGGAGTTGAAGCCCGACGTCG
TCCTCATGGACGTCAAGATGCCGGGCATGGACGGCATCGACGCGCTGCGCAGACTCCGCGAACTCGACCTCCCCGCGCGC
GTGTTGATCGTCACCAGCTTCACCGAGCAGCGCACGGTGATCCCGGCCCTGCGCGCGGGCGCCGCCGGATACGTCTACAA
GGACGTGGACCCGGACGCCCTGGCCGGCGCCATCCGGTCCGTCCACGCGGGCCACATCCTGCTCCAACCCGAGGTCGCCG
GCGTCCTGTTGTCCCAGGAGGAGTCCAACTCGGGGCAGGGGAGAGGTGGTTCGCTCACCGAGCGGGAGCGCGAGGTGCTC
GGGCTGATCGCCGACGGCCGCTCCAACCGCGAGATAGCCCGCGCGCTGGTGCTCTCCGAGAAGACGGTCAAGACCCACGT
CTCGAACATCCTGATGAAACTCGACCTGGCGGACCGCACCCAGGCCGCCCTGTTCGCCGTACGCCATGGTCTGACGAGAT
AG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(151-206)

Response regulator receiver domain (Response_reg)

(7-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

46.948

100

0.469
  degU Bacillus subtilis subsp. subtilis str. 168

38.288

100

0.399