Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   L3X06_RS05205 Genome accession   NZ_CP091422
Coordinates   1047851..1049077 (-) Length   408 a.a.
NCBI ID   WP_002934974.1    Uniprot ID   G7SE29
Organism   Streptococcus suis strain LSM157     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1042851..1054077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3X06_RS05180 (L3X06_05180) - 1043031..1044338 (-) 1308 WP_012028097.1 excalibur calcium-binding domain-containing protein -
  L3X06_RS05185 (L3X06_05185) - 1044473..1044654 (+) 182 Protein_975 4-oxalocrotonate tautomerase -
  L3X06_RS05190 (L3X06_05190) lepA 1044704..1046536 (-) 1833 WP_002943192.1 translation elongation factor 4 -
  L3X06_RS05195 (L3X06_05195) ndk 1046774..1047187 (-) 414 WP_002934976.1 nucleoside-diphosphate kinase -
  L3X06_RS05200 (L3X06_05200) yihA 1047210..1047797 (-) 588 WP_014638915.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  L3X06_RS05205 (L3X06_05205) clpX 1047851..1049077 (-) 1227 WP_002934974.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  L3X06_RS05210 (L3X06_05210) - 1049099..1049272 (-) 174 WP_002934972.1 hypothetical protein -
  L3X06_RS05215 (L3X06_05215) - 1049275..1049787 (-) 513 WP_106474372.1 dihydrofolate reductase -
  L3X06_RS05220 (L3X06_05220) - 1049962..1050801 (-) 840 WP_053866945.1 thymidylate synthase -
  L3X06_RS05225 (L3X06_05225) - 1050853..1051155 (-) 303 WP_024406323.1 hypothetical protein -
  L3X06_RS05230 (L3X06_05230) - 1051167..1051445 (-) 279 WP_002934968.1 hypothetical protein -
  L3X06_RS05235 (L3X06_05235) - 1051571..1052530 (-) 960 WP_106474371.1 ROK family glucokinase -
  L3X06_RS05240 (L3X06_05240) - 1052621..1052956 (-) 336 WP_002943156.1 hypothetical protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45318.84 Da        Isoelectric Point: 4.6382

>NTDB_id=651011 L3X06_RS05205 WP_002934974.1 1047851..1049077(-) (clpX) [Streptococcus suis strain LSM157]
MAVKHTHELIYCSFCGKNQEEVKKIIAGNNVFICNECVELAQEIIREELAEEVLTDLADTPKPQELLNILNNYVIGQDRA
KRALAVAVYNHYKRINFQDSRDENDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENIL
LKLLQAADFNIDRAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIHVDTKN
ILFIVGGAFDGIEEIVKQRLGEKIIGFGHNNRAIDEKESYMQHIIADDIQKFGIIPELIGRLPVFAALDQLTTEDLVRIL
TEPKNALVKQYQTLLSYDDVELDFDEDALLAIAEKAIERKTGARGLRSIIEETMLDVMFEVPGQDNVKRVRVTKAAVDGK
EKPLLETA

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=651011 L3X06_RS05205 WP_002934974.1 1047851..1049077(-) (clpX) [Streptococcus suis strain LSM157]
ATGGCTGTTAAGCATACACATGAGCTAATCTATTGCTCATTTTGCGGAAAAAATCAAGAAGAAGTTAAAAAAATTATCGC
TGGAAACAATGTCTTCATTTGTAATGAATGCGTGGAACTAGCACAGGAAATCATTCGTGAGGAACTGGCAGAAGAAGTTT
TGACAGACTTGGCCGATACGCCAAAGCCACAAGAATTACTCAATATCCTGAACAACTACGTCATCGGACAGGATCGTGCA
AAACGTGCTTTAGCAGTAGCCGTTTACAACCACTACAAACGTATCAATTTCCAGGATAGCCGTGATGAGAACGATGTTGA
TTTGCAAAAATCAAATATCCTTATGATTGGTCCGACTGGTTCAGGAAAAACCTTCCTAGCACAGACCTTGGCTAAAAGTT
TGAATGTCCCGTTTGCTATTGCTGATGCGACCGCTCTTACTGAGGCGGGTTATGTTGGTGAAGACGTAGAAAATATCCTC
CTCAAACTTTTGCAGGCTGCAGACTTTAACATCGACCGTGCAGAAAGAGGAATTATTTATGTGGATGAAATTGATAAAAT
TGCCAAAAAAGGTGAAAATGTGTCCATTACCCGCGATGTATCTGGTGAAGGTGTCCAGCAAGCTCTCCTAAAAATTATCG
AGGGAACTGTGGCCAGCGTACCACCACAAGGCGGACGCAAACATCCAAACCAAGAAATGATTCACGTGGACACCAAAAAT
ATCCTGTTCATCGTTGGCGGTGCATTTGATGGTATCGAAGAAATCGTCAAACAGCGTCTCGGTGAAAAAATCATCGGTTT
TGGTCATAATAATCGTGCTATTGATGAAAAAGAATCATACATGCAACATATCATTGCAGACGATATTCAAAAATTCGGTA
TCATTCCAGAGTTGATTGGTCGCTTGCCTGTATTTGCAGCTTTGGACCAATTGACAACAGAGGATTTGGTACGTATTTTG
ACGGAACCTAAGAATGCTCTTGTAAAACAATACCAGACACTCTTGTCTTATGATGACGTGGAGCTTGACTTTGATGAGGA
CGCCTTGTTAGCAATTGCAGAAAAAGCAATTGAACGTAAGACTGGCGCTCGTGGACTTCGTTCCATCATTGAAGAAACGA
TGTTGGATGTCATGTTTGAGGTGCCAGGCCAAGATAACGTTAAACGTGTTCGTGTAACAAAAGCAGCAGTAGACGGTAAA
GAAAAGCCTTTACTAGAAACTGCTTAA

Domains

Predicted by InterproScan.

ClpX C4-type zinc finger (zf-C4_ClpX)

(11-47)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(311-389)

AAA domain (Cdc48 subfamily) (AAA_2)

(109-304)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G7SE29

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

83.13

100

0.833
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.209

98.529

0.574