Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHA62_RS21320 Genome accession   NZ_CP107998
Coordinates   4865474..4866142 (-) Length   222 a.a.
NCBI ID   WP_328680899.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00343     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4860474..4871142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA62_RS21295 (OHA62_21285) - 4860897..4861382 (+) 486 WP_328680888.1 hypothetical protein -
  OHA62_RS21300 (OHA62_21290) - 4861439..4861867 (-) 429 WP_328680889.1 hypothetical protein -
  OHA62_RS21305 (OHA62_21295) - 4861937..4863400 (-) 1464 WP_328680890.1 MFS transporter -
  OHA62_RS21310 (OHA62_21300) - 4863498..4864070 (+) 573 WP_328680893.1 MarR family transcriptional regulator -
  OHA62_RS21315 (OHA62_21305) - 4864119..4865342 (-) 1224 WP_328680896.1 cytochrome P450 -
  OHA62_RS21320 (OHA62_21310) vraR 4865474..4866142 (-) 669 WP_328680899.1 response regulator transcription factor Regulator
  OHA62_RS21325 (OHA62_21315) - 4866139..4867509 (-) 1371 WP_328680901.1 histidine kinase -
  OHA62_RS21330 (OHA62_21320) vraR 4867656..4868333 (-) 678 WP_328680904.1 response regulator transcription factor Regulator
  OHA62_RS21335 (OHA62_21325) - 4868330..4869700 (-) 1371 WP_328680906.1 histidine kinase -
  OHA62_RS21340 (OHA62_21330) - 4869711..4870931 (-) 1221 WP_328680907.1 acyltransferase -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 23989.73 Da        Isoelectric Point: 4.7614

>NTDB_id=651007 OHA62_RS21320 WP_328680899.1 4865474..4866142(-) (vraR) [Streptomyces sp. NBC_00343]
MTIRVLIADDQMMVREGFSVLLGAMPDIEVVGEAVNGRDAVERVRELAPDVVLMDIRMPEMNGIEATREIVAADGAAKVL
VLTTFDLDEYVYQALRAGASGFLLKDASARQLADGVRVVAAGEALLAPSVTKRLITEFSKLSETPRLMSAAQHGAYGDLT
ERETEVLVLIAQGLSNGEIAERLVVAESTIKTHVSRVLVKLGLRDRTQAAVFAYEARLVRPG

Nucleotide


Download         Length: 669 bp        

>NTDB_id=651007 OHA62_RS21320 WP_328680899.1 4865474..4866142(-) (vraR) [Streptomyces sp. NBC_00343]
ATGACGATCCGCGTACTGATCGCGGACGACCAGATGATGGTGCGCGAGGGCTTCTCGGTCCTGTTGGGCGCGATGCCGGA
CATCGAGGTCGTCGGCGAGGCGGTGAACGGGCGCGACGCGGTCGAGCGGGTGCGTGAACTGGCCCCGGACGTCGTGCTGA
TGGACATCCGGATGCCGGAGATGAACGGCATCGAGGCGACCAGGGAGATCGTCGCGGCGGACGGTGCGGCGAAGGTGCTC
GTGCTCACCACGTTCGACCTCGACGAGTACGTCTACCAGGCGCTGCGGGCGGGAGCCTCCGGGTTCCTCCTCAAGGACGC
CTCGGCACGTCAACTCGCCGACGGGGTACGGGTGGTGGCGGCCGGCGAGGCGCTGCTCGCGCCCTCCGTCACCAAGCGGC
TGATCACGGAGTTCTCGAAGCTGTCCGAGACACCCCGTCTGATGTCGGCCGCGCAGCACGGGGCGTACGGGGATCTGACC
GAGCGGGAGACGGAGGTGCTGGTCCTCATCGCGCAGGGGCTGTCGAACGGGGAGATCGCCGAGCGGCTGGTGGTCGCCGA
GTCGACGATCAAGACCCATGTCAGCCGGGTCCTGGTGAAGCTGGGGCTGCGGGACCGTACACAGGCGGCGGTGTTCGCGT
ACGAGGCGAGGCTGGTGAGACCGGGTTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(159-213)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

43.636

99.099

0.432
  degU Bacillus subtilis subsp. subtilis str. 168

42.202

98.198

0.414