Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OHA62_RS21165 Genome accession   NZ_CP107998
Coordinates   4833797..4834396 (-) Length   199 a.a.
NCBI ID   WP_317772726.1    Uniprot ID   A0ABU4FEI4
Organism   Streptomyces sp. NBC_00343     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4828797..4839396
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA62_RS21125 (OHA62_21115) - 4828808..4830097 (+) 1290 WP_328680821.1 HAMP domain-containing sensor histidine kinase -
  OHA62_RS21130 (OHA62_21120) - 4830063..4830563 (-) 501 WP_328680824.1 SgcJ/EcaC family oxidoreductase -
  OHA62_RS21135 (OHA62_21125) - 4830669..4830860 (-) 192 WP_328680825.1 hypothetical protein -
  OHA62_RS21140 (OHA62_21130) - 4830930..4831358 (-) 429 WP_328680827.1 Uma2 family endonuclease -
  OHA62_RS21145 (OHA62_21135) - 4831385..4832437 (-) 1053 WP_328680829.1 hypothetical protein -
  OHA62_RS21150 (OHA62_21140) - 4832722..4832922 (-) 201 WP_328680831.1 DUF397 domain-containing protein -
  OHA62_RS21155 (OHA62_21145) - 4832919..4833089 (-) 171 WP_328680834.1 Scr1 family TA system antitoxin-like transcriptional regulator -
  OHA62_RS21160 (OHA62_21150) - 4833145..4833804 (-) 660 WP_328680835.1 DUF5063 domain-containing protein -
  OHA62_RS21165 (OHA62_21155) recR 4833797..4834396 (-) 600 WP_317772726.1 recombination mediator RecR Machinery gene
  OHA62_RS21170 (OHA62_21160) - 4834466..4834810 (-) 345 WP_266860004.1 YbaB/EbfC family nucleoid-associated protein -
  OHA62_RS21175 (OHA62_21165) - 4835095..4835814 (+) 720 WP_328680844.1 SLATT domain-containing protein -
  OHA62_RS21180 (OHA62_21170) - 4836283..4838382 (-) 2100 WP_328686405.1 serine/threonine-protein kinase -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21755.19 Da        Isoelectric Point: 4.9908

>NTDB_id=651006 OHA62_RS21165 WP_317772726.1 4833797..4834396(-) (recR) [Streptomyces sp. NBC_00343]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAQCLMEVKAKVRFCATCGNVAQEELCGICRDPRRDLSV
ICVVEEPKDVVAVERTREFRGKYHVLGGAISPIEGVGPDDLRIRELLARLADGTVTELIIATDPNLEGEATATYLARMLK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=651006 OHA62_RS21165 WP_317772726.1 4833797..4834396(-) (recR) [Streptomyces sp. NBC_00343]
TTGTACGAAGGCGTGGTCCAGGACCTCATCGACGAGTTGGGGCGACTCCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTGCAGGCGGAGCCGACGGACGTCCGTCGGCTCGCGCAGTGCCTGATGGAGGTCAAGGCGAAGGTCC
GCTTCTGCGCGACCTGCGGAAACGTCGCGCAGGAAGAGCTGTGCGGCATCTGCCGCGACCCGCGCCGCGACCTCTCGGTG
ATCTGCGTGGTCGAGGAGCCGAAGGACGTCGTGGCGGTCGAACGCACCCGCGAGTTCCGGGGCAAGTACCACGTCCTGGG
CGGCGCGATCAGCCCGATCGAAGGTGTCGGACCCGACGACCTGCGTATACGAGAACTTCTCGCGCGGTTGGCCGACGGTA
CGGTCACGGAACTGATCATTGCCACGGACCCGAATCTGGAAGGCGAGGCCACGGCCACGTACCTCGCCCGCATGCTCAAG
CCCATGGGCCTCAAGGTCACCCGCCTGGCCAGCGGCCTCCCGGTGGGCGGCGACCTGGAATACGCGGACGAGGTGACCCT
CGGCCGCGCCTTCGAGGGGAGACGACTCCTAGATGTCTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH)

(2-27)

RecR protein (RecR_ZnF)

(38-77)

Toprim domain (Toprim_4)

(79-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.102

98.492

0.543
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

53.608

97.487

0.523
  recR Streptococcus pneumoniae R6

47.423

97.487

0.462