Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   BBAG_RS07225 Genome accession   NZ_AP012322
Coordinates   1791811..1793598 (-) Length   595 a.a.
NCBI ID   WP_003825034.1    Uniprot ID   C4FCP2
Organism   Bifidobacterium angulatum DSM 20098 = JCM 7096     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1786811..1798598
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBAG_RS08535 - 1788226..1788336 (-) 111 Protein_1407 AGE family epimerase/isomerase -
  BBAG_RS07215 (BBAG_1419) - 1788477..1789490 (+) 1014 WP_003825030.1 ribose-phosphate diphosphokinase -
  BBAG_RS07220 (BBAG_1420) rcrQ 1789956..1791797 (-) 1842 WP_033508939.1 ABC transporter ATP-binding protein Regulator
  BBAG_RS07225 (BBAG_1421) rcrP 1791811..1793598 (-) 1788 WP_003825034.1 ABC transporter ATP-binding protein Regulator
  BBAG_RS07230 (BBAG_1422) - 1793939..1794445 (-) 507 WP_003825035.1 MarR family winged helix-turn-helix transcriptional regulator -
  BBAG_RS07235 (BBAG_1423) - 1794531..1795565 (-) 1035 WP_003825037.1 aldo/keto reductase -
  BBAG_RS07240 (BBAG_1424) thiS 1795917..1796111 (+) 195 WP_003825038.1 sulfur carrier protein ThiS -
  BBAG_RS07245 (BBAG_1425) thiF 1796203..1796916 (+) 714 WP_003825040.1 sulfur carrier protein ThiS adenylyltransferase ThiF -
  BBAG_RS07250 (BBAG_1426) - 1796948..1797862 (+) 915 WP_003825041.1 thiazole synthase -

Sequence

Protein


Download         Length: 595 a.a.        Molecular weight: 65418.74 Da        Isoelectric Point: 6.6497

>NTDB_id=65098 BBAG_RS07225 WP_003825034.1 1791811..1793598(-) (rcrP) [Bifidobacterium angulatum DSM 20098 = JCM 7096]
MLRIMRYLSKAEIGQMLIALVSIVGQIWLDLTLPDYMSDITTLVETPGSTMHDIWVAGGKMLLVSLGSVACAIVTGYIAA
RVGASFSQRLRSLEFNKVESFGPAEMSRFSTASLITRSTNDITQIQMFITMGLMMIVKSPIMAVWAICKIAGKGFEWTVA
TGIAVVVLMAAICVIMFFVMPKFKAMQRLTDNINLVARENLTGLRVVRAYNAEDYQEAKFTKANKELTDTQLFTNRAMAI
MMPLMNTIMNGLMLAVYWIGACLIDAADLTDKLTTFANMVVFSSYSVQVIMSFLLMSMVFVLWPRADVSAQRVLEVIDTK
PLITDGTHTEGEPGKQGEIEFRNVSFTYPDSRKAMLEGISFTAKKGQTVAFIGSTGSGKSSLINLVPRFYDATQGQVLVD
GVDVRDYTLKALRDKIGYVPQQSFLFKGTIASNVSYGDKSGSKSGSEEAGTDADMANVRKACEVAQATEFVEKKDNTYES
SIAQGGSNVSGGQKQRLSIARAVYRHPEILIFDDSFSALDFKTDRAVRDALAKEAKDSTKLIVAQRIGTIMNADRIVVLD
QGKVVGQGTHEELLDNCDVYRQIAQSQLSEDELKH

Nucleotide


Download         Length: 1788 bp        

>NTDB_id=65098 BBAG_RS07225 WP_003825034.1 1791811..1793598(-) (rcrP) [Bifidobacterium angulatum DSM 20098 = JCM 7096]
ATGCTTCGCATCATGCGATACCTCTCCAAAGCGGAGATAGGCCAGATGCTCATAGCACTGGTCAGCATCGTAGGGCAGAT
CTGGCTCGATCTGACCCTGCCGGACTACATGTCCGACATCACCACACTCGTGGAAACCCCCGGCAGCACAATGCATGACA
TCTGGGTGGCCGGCGGCAAAATGCTGCTCGTCTCGCTCGGCTCCGTCGCCTGCGCCATCGTCACCGGCTATATCGCCGCA
CGCGTGGGCGCCTCATTCAGCCAGCGGCTGCGCTCGCTCGAATTCAACAAGGTGGAAAGCTTCGGCCCGGCCGAAATGAG
CAGATTCTCCACCGCATCGCTCATCACCCGTTCCACCAACGACATCACGCAGATCCAGATGTTCATCACCATGGGCCTCA
TGATGATCGTCAAATCGCCGATCATGGCCGTATGGGCCATCTGCAAGATCGCCGGCAAAGGCTTCGAATGGACGGTCGCC
ACCGGCATCGCCGTCGTGGTATTGATGGCCGCCATCTGCGTGATCATGTTCTTCGTCATGCCGAAGTTCAAAGCCATGCA
GCGCCTGACCGACAACATCAACCTGGTGGCACGCGAAAACCTGACCGGTCTGCGCGTGGTACGCGCCTACAACGCCGAAG
ACTACCAGGAAGCCAAATTCACCAAGGCCAACAAGGAACTCACCGACACCCAGCTGTTCACCAACCGTGCCATGGCCATC
ATGATGCCGCTGATGAACACCATCATGAACGGACTTATGCTGGCCGTCTACTGGATCGGCGCCTGCCTCATCGACGCGGC
CGACCTGACCGACAAGCTCACCACCTTCGCCAACATGGTCGTGTTCTCCAGCTACTCCGTGCAGGTCATCATGAGCTTCC
TGCTTATGAGCATGGTATTCGTGCTCTGGCCGCGCGCCGACGTGTCCGCACAGCGCGTGCTGGAAGTAATCGACACCAAA
CCGCTCATCACCGATGGCACACACACCGAAGGCGAACCCGGCAAGCAGGGTGAAATCGAATTCCGCAACGTAAGCTTCAC
CTACCCGGATTCGCGCAAGGCCATGCTCGAAGGCATCAGCTTCACCGCCAAGAAAGGCCAGACCGTGGCATTCATCGGCT
CCACCGGTTCCGGCAAATCCTCACTCATCAACCTGGTGCCGCGCTTCTACGATGCCACACAAGGCCAGGTGCTGGTCGAC
GGCGTGGACGTGCGCGACTACACGCTCAAAGCCCTGCGCGACAAGATCGGCTACGTACCGCAGCAGTCGTTCCTGTTCAA
AGGCACCATCGCCTCCAACGTGAGCTACGGCGACAAGTCGGGCAGCAAGTCGGGCAGCGAGGAAGCCGGCACGGATGCCG
ATATGGCCAACGTGCGCAAGGCATGCGAAGTGGCCCAGGCCACCGAATTCGTAGAAAAGAAAGACAACACCTACGAATCC
TCCATCGCACAAGGCGGCTCCAACGTATCCGGCGGGCAGAAGCAGCGCCTGTCGATCGCCCGCGCCGTCTACCGCCACCC
GGAGATCCTGATCTTCGACGACTCCTTCTCCGCGCTCGACTTCAAAACCGACCGTGCGGTACGCGACGCGCTCGCCAAGG
AAGCGAAGGACTCCACCAAACTCATCGTCGCCCAGCGCATCGGTACCATCATGAACGCCGACCGCATCGTCGTACTCGAC
CAAGGCAAGGTGGTCGGTCAAGGCACGCATGAGGAACTGCTCGACAACTGCGACGTATACCGCCAGATCGCGCAATCGCA
GCTCAGCGAAGACGAATTGAAGCACTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(17-292)

ABC transporter (ABC_tran)

(356-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C4FCP2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

50.082

100

0.511

Multiple sequence alignment