Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   BBAG_RS07220 Genome accession   NZ_AP012322
Coordinates   1789956..1791797 (-) Length   613 a.a.
NCBI ID   WP_033508939.1    Uniprot ID   -
Organism   Bifidobacterium angulatum DSM 20098 = JCM 7096     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1784956..1796797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBAG_RS07210 (BBAG_1418) - 1786684..1788165 (+) 1482 WP_003825028.1 amino acid permease -
  BBAG_RS08535 - 1788226..1788336 (-) 111 Protein_1407 AGE family epimerase/isomerase -
  BBAG_RS07215 (BBAG_1419) - 1788477..1789490 (+) 1014 WP_003825030.1 ribose-phosphate diphosphokinase -
  BBAG_RS07220 (BBAG_1420) rcrQ 1789956..1791797 (-) 1842 WP_033508939.1 ABC transporter ATP-binding protein Regulator
  BBAG_RS07225 (BBAG_1421) rcrP 1791811..1793598 (-) 1788 WP_003825034.1 ABC transporter ATP-binding protein Regulator
  BBAG_RS07230 (BBAG_1422) - 1793939..1794445 (-) 507 WP_003825035.1 MarR family winged helix-turn-helix transcriptional regulator -
  BBAG_RS07235 (BBAG_1423) - 1794531..1795565 (-) 1035 WP_003825037.1 aldo/keto reductase -
  BBAG_RS07240 (BBAG_1424) thiS 1795917..1796111 (+) 195 WP_003825038.1 sulfur carrier protein ThiS -

Sequence

Protein


Download         Length: 613 a.a.        Molecular weight: 67320.94 Da        Isoelectric Point: 6.5010

>NTDB_id=65097 BBAG_RS07220 WP_033508939.1 1789956..1791797(-) (rcrQ) [Bifidobacterium angulatum DSM 20098 = JCM 7096]
MPRGMGRGRGPVEKPLNFGGAMKKLVRFCRRYIPVIVVSLILGAAGTICQIIGPDKLKDMTNEITKGLPAIVHGKPVMNS
IDMDAVSRIGWTLVALYVGYAVLCYVQSWLMANVTQRTAQQLREAISVKINKLPLKYFDNTSYGDVLSRITNDVDAIGQT
LGQSLGSLITSITLFFGALIMMFYNNVIMTLCAIGSALFGLIIMGLIMKVSQKYFAQQQIALGDVNGHVEEMYSGHTVVK
AYCGEEDSIARFEKYNNDLYVSGWKSQFLSGLMMPLMNFIGNFGYVVVCVVGAALAMDGKIEFGVIVAFMMYIRLFTQPL
SQFAQAFQNLQRCAAASERVFGFLDEPELADESDKQALLGVGVDGKPQQVRGDVEFSHVRFGYDPGKTIINDFSASVKSG
QKIAIVGPTGAGKTTMVNLLMRFYEISGGSISIDGVDTKSVPRWNVHDQFSMVLQDTWVFHGTVRENIAYSKPGVTDEQI
INACKAVGLHHYIMSLPNGYDTVLDDRTSLSQGQKQLLTIARAMVEDAPILILDEATSSVDTRTEELIQKAMDALTVGRT
SFVIAHRLSTIRDADMILVMNGGDIVERGTHEELLAKSGFYADIYNSQFTLAQ

Nucleotide


Download         Length: 1842 bp        

>NTDB_id=65097 BBAG_RS07220 WP_033508939.1 1789956..1791797(-) (rcrQ) [Bifidobacterium angulatum DSM 20098 = JCM 7096]
ATGCCAAGAGGAATGGGACGTGGGCGTGGCCCCGTTGAAAAACCGCTGAATTTCGGCGGTGCGATGAAGAAGCTGGTACG
CTTCTGCCGCCGATATATTCCGGTGATCGTTGTTTCGCTGATTCTGGGCGCGGCCGGCACCATCTGCCAGATCATCGGCC
CGGACAAGCTTAAAGACATGACCAACGAGATCACCAAGGGCCTGCCGGCCATCGTGCACGGCAAGCCGGTGATGAACTCG
ATCGATATGGACGCCGTCTCACGCATCGGCTGGACGCTCGTCGCACTATACGTGGGCTATGCGGTGCTGTGCTACGTGCA
AAGCTGGCTGATGGCGAACGTGACACAGCGCACCGCACAGCAGCTGCGCGAAGCGATCAGCGTGAAAATCAACAAGCTGC
CGCTCAAATACTTCGACAACACCAGCTACGGCGACGTGCTCAGCCGCATCACCAACGATGTGGACGCCATCGGCCAGACG
CTCGGCCAGTCGCTCGGCTCGCTCATCACCTCCATCACGCTGTTCTTCGGCGCGCTGATCATGATGTTCTACAACAACGT
GATCATGACGCTGTGCGCCATCGGCTCCGCGCTGTTCGGCCTGATCATCATGGGCCTGATCATGAAGGTCTCGCAGAAAT
ACTTCGCCCAGCAGCAGATCGCCCTGGGCGACGTGAACGGCCACGTGGAGGAGATGTACTCCGGCCACACCGTGGTCAAG
GCCTACTGCGGCGAAGAGGACTCCATCGCACGCTTCGAAAAATACAACAACGACCTGTACGTCTCCGGCTGGAAGAGCCA
GTTCCTCTCCGGCCTGATGATGCCGCTCATGAACTTCATCGGCAACTTCGGCTACGTGGTCGTGTGCGTGGTGGGCGCGG
CGCTCGCCATGGACGGCAAGATCGAATTCGGCGTGATCGTGGCGTTCATGATGTACATCCGCCTGTTCACCCAGCCGCTG
TCGCAGTTCGCGCAGGCCTTCCAGAACCTGCAGCGTTGCGCGGCCGCCTCCGAGCGCGTGTTCGGCTTCCTCGACGAGCC
GGAACTGGCCGACGAATCCGACAAGCAGGCGCTGCTCGGTGTCGGTGTGGACGGCAAGCCGCAGCAGGTGCGCGGCGACG
TGGAATTCAGCCACGTGCGTTTCGGCTACGATCCGGGCAAGACCATCATCAACGACTTCTCCGCCTCCGTGAAATCCGGC
CAGAAGATCGCCATCGTCGGCCCGACCGGTGCCGGCAAGACCACCATGGTGAACCTGCTCATGCGTTTCTACGAGATCTC
CGGCGGCTCGATCTCGATCGATGGCGTGGACACCAAGTCCGTGCCGCGCTGGAACGTGCACGACCAGTTCTCCATGGTGC
TGCAGGACACATGGGTGTTCCATGGAACAGTACGTGAAAACATCGCGTACTCGAAGCCCGGCGTGACCGACGAACAGATC
ATCAACGCCTGCAAGGCCGTGGGCCTGCACCATTACATCATGTCGCTGCCGAACGGCTACGACACCGTGCTGGACGACAG
GACCTCGCTATCGCAAGGCCAGAAGCAGCTGCTCACCATCGCCCGCGCCATGGTGGAGGACGCGCCGATCCTGATCCTCG
ACGAGGCGACCTCGTCGGTCGACACGCGTACCGAGGAGCTGATCCAGAAGGCCATGGACGCGCTGACCGTGGGCCGCACG
AGCTTCGTGATCGCGCACCGCCTGTCCACCATCCGCGACGCCGACATGATTCTGGTGATGAACGGCGGCGACATCGTGGA
ACGCGGCACCCATGAGGAGCTGCTCGCCAAGTCCGGCTTCTACGCCGACATCTACAACAGCCAGTTCACGCTGGCGCAGT
AG

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(391-538)

ABC transporter transmembrane region (ABC_membrane)

(78-320)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

55.178

96.085

0.53

Multiple sequence alignment