Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   L3V45_RS16850 Genome accession   NZ_CP091421
Coordinates   3401606..3402295 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus sp. R45     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3396606..3407295
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3V45_RS16815 (L3V45_16815) - 3396804..3397286 (-) 483 WP_003151394.1 flagellar protein FlgN -
  L3V45_RS16820 (L3V45_16820) flgM 3397301..3397567 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  L3V45_RS16825 (L3V45_16825) - 3397637..3398056 (-) 420 WP_103695175.1 TIGR03826 family flagellar region protein -
  L3V45_RS16830 (L3V45_16830) comFC 3398130..3398819 (-) 690 WP_236837450.1 phosphoribosyltransferase family protein Machinery gene
  L3V45_RS16835 (L3V45_16835) - 3398825..3399109 (-) 285 WP_003151389.1 competence protein ComFB -
  L3V45_RS16840 (L3V45_16840) comFA 3399167..3400552 (-) 1386 WP_236837116.1 DEAD/DEAH box helicase Machinery gene
  L3V45_RS16845 (L3V45_16845) - 3400660..3401508 (-) 849 WP_024085866.1 DegV family protein -
  L3V45_RS16850 (L3V45_16850) degU 3401606..3402295 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  L3V45_RS16855 (L3V45_16855) degS 3402372..3403535 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  L3V45_RS16860 (L3V45_16860) - 3403758..3404405 (+) 648 WP_003151384.1 YigZ family protein -
  L3V45_RS16865 (L3V45_16865) - 3404410..3405624 (+) 1215 WP_014305930.1 LCP family protein -
  L3V45_RS16870 (L3V45_16870) - 3405714..3406790 (-) 1077 WP_003151382.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=650968 L3V45_RS16850 WP_003219701.1 3401606..3402295(-) (degU) [Bacillus sp. R45]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=650968 L3V45_RS16850 WP_003219701.1 3401606..3402295(-) (degU) [Bacillus sp. R45]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTATCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1