Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   L3V45_RS16840 Genome accession   NZ_CP091421
Coordinates   3399167..3400552 (-) Length   461 a.a.
NCBI ID   WP_236837116.1    Uniprot ID   -
Organism   Bacillus sp. R45     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3394167..3405552
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3V45_RS16805 (L3V45_16805) flgL 3394342..3395259 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  L3V45_RS16810 (L3V45_16810) flgK 3395271..3396788 (-) 1518 WP_003151395.1 flagellar hook-associated protein FlgK -
  L3V45_RS16815 (L3V45_16815) - 3396804..3397286 (-) 483 WP_003151394.1 flagellar protein FlgN -
  L3V45_RS16820 (L3V45_16820) flgM 3397301..3397567 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  L3V45_RS16825 (L3V45_16825) - 3397637..3398056 (-) 420 WP_103695175.1 TIGR03826 family flagellar region protein -
  L3V45_RS16830 (L3V45_16830) comFC 3398130..3398819 (-) 690 WP_236837450.1 phosphoribosyltransferase family protein Machinery gene
  L3V45_RS16835 (L3V45_16835) - 3398825..3399109 (-) 285 WP_003151389.1 competence protein ComFB -
  L3V45_RS16840 (L3V45_16840) comFA 3399167..3400552 (-) 1386 WP_236837116.1 DEAD/DEAH box helicase Machinery gene
  L3V45_RS16845 (L3V45_16845) - 3400660..3401508 (-) 849 WP_024085866.1 DegV family protein -
  L3V45_RS16850 (L3V45_16850) degU 3401606..3402295 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  L3V45_RS16855 (L3V45_16855) degS 3402372..3403535 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  L3V45_RS16860 (L3V45_16860) - 3403758..3404405 (+) 648 WP_003151384.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52542.93 Da        Isoelectric Point: 10.1310

>NTDB_id=650967 L3V45_RS16840 WP_236837116.1 3399167..3400552(-) (comFA) [Bacillus sp. R45]
MSEGASEFSEVRDFFYGRHLLRFEIPFSDQRINRFIEKEHITAEPSIIRRKNRYVCQRCGQSDQACFAAFWAPSAKRQIT
YCRACVMMGRADELTSLYSWNQAPENSWEPVKLSWEGTLTDGQKQAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNQGLRVCVATPRTDVVLELLPRLKKAFEKVDVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKNAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSVHVLKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVLFHFGITVGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=650967 L3V45_RS16840 WP_236837116.1 3399167..3400552(-) (comFA) [Bacillus sp. R45]
ATGTCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATTTGAGATACCGTT
TTCAGATCAGCGCATCAACCGTTTTATAGAAAAAGAGCATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAGCCCCTGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCAGGCCGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCTGGTATCGAGTTT
GCCCTGAATCAAGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGACGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGCTTGACTCCGCTGATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGATATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGGTTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCTGA
CACATTAAAAAAGAATGCTGAAGCAGGTTTGCTGAAAAGCGTTCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCGGCTTGATCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCTAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCCTGTTTCATTTCGGAATTACAGTCGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(328-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.826

99.783

0.627