Detailed information    

insolico Bioinformatically predicted

Overview

Name   degQ   Type   Regulator
Locus tag   L3V45_RS14920 Genome accession   NZ_CP091421
Coordinates   3024933..3025073 (-) Length   46 a.a.
NCBI ID   WP_003152043.1    Uniprot ID   A3KLB4
Organism   Bacillus sp. R45     
Function   modification of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3019933..3030073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3V45_RS14895 (L3V45_14895) - 3020279..3020662 (-) 384 WP_003152054.1 hotdog fold thioesterase -
  L3V45_RS14900 (L3V45_14900) comA 3020684..3021328 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  L3V45_RS14905 (L3V45_14905) comP 3021409..3023709 (-) 2301 WP_236837055.1 histidine kinase Regulator
  L3V45_RS14910 (L3V45_14910) comX 3023723..3023896 (-) 174 WP_012118314.1 competence pheromone ComX -
  L3V45_RS14915 (L3V45_14915) - 3023865..3024725 (-) 861 WP_159073777.1 polyprenyl synthetase family protein -
  L3V45_RS14920 (L3V45_14920) degQ 3024933..3025073 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  L3V45_RS14925 (L3V45_14925) - 3025539..3025880 (+) 342 WP_014305721.1 hypothetical protein -
  L3V45_RS14930 (L3V45_14930) - 3025887..3027107 (-) 1221 WP_003152038.1 EAL and HDOD domain-containing protein -
  L3V45_RS14935 (L3V45_14935) - 3027237..3028703 (-) 1467 WP_014305722.1 nicotinate phosphoribosyltransferase -
  L3V45_RS14940 (L3V45_14940) - 3028721..3029272 (-) 552 WP_003152033.1 isochorismatase family cysteine hydrolase -
  L3V45_RS14945 (L3V45_14945) - 3029369..3029767 (-) 399 WP_003152031.1 DUF1694 domain-containing protein -

Sequence

Protein


Download         Length: 46 a.a.        Molecular weight: 5518.30 Da        Isoelectric Point: 4.9432

>NTDB_id=650963 L3V45_RS14920 WP_003152043.1 3024933..3025073(-) (degQ) [Bacillus sp. R45]
MENKLEEVKQLLFRLENDIRETTDSLRNINKSIDQLDKFSYAMKIS

Nucleotide


Download         Length: 141 bp        

>NTDB_id=650963 L3V45_RS14920 WP_003152043.1 3024933..3025073(-) (degQ) [Bacillus sp. R45]
GTGGAAAACAAATTAGAAGAAGTAAAGCAATTATTATTCCGACTTGAAAATGATATCAGAGAAACAACCGACTCATTACG
AAACATTAACAAAAGCATTGATCAGCTCGATAAATTCTCATATGCAATGAAAATTTCTTAA

Domains

Predicted by InterproScan.

DegQ (SacQ) family (DegQ)

(1-46)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degQ Bacillus subtilis subsp. subtilis str. 168

89.13

100

0.891