Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHS16_RS31275 Genome accession   NZ_CP107996
Coordinates   6902861..6903520 (-) Length   219 a.a.
NCBI ID   WP_328540609.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00344     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6897861..6908520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHS16_RS31255 (OHS16_31245) - 6898255..6899271 (-) 1017 WP_328540605.1 N-acetylmuramoyl-L-alanine amidase -
  OHS16_RS31260 (OHS16_31250) - 6899696..6900361 (-) 666 WP_328540606.1 hypothetical protein -
  OHS16_RS31265 (OHS16_31255) - 6900532..6902091 (-) 1560 WP_328540607.1 carboxylesterase family protein -
  OHS16_RS31270 (OHS16_31260) - 6902113..6902748 (-) 636 WP_328540608.1 GPP34 family phosphoprotein -
  OHS16_RS31275 (OHS16_31265) vraR 6902861..6903520 (-) 660 WP_328540609.1 response regulator transcription factor Regulator
  OHS16_RS31280 (OHS16_31270) - 6903517..6904686 (-) 1170 WP_328540610.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 23647.33 Da        Isoelectric Point: 5.7757

>NTDB_id=650962 OHS16_RS31275 WP_328540609.1 6902861..6903520(-) (vraR) [Streptomyces sp. NBC_00344]
MTLRVVVADDQDLVRTGFRMIIDARDDLEVVGEAADGQEAVRLTEELAPDVVLMDVRMPVVDGIEATRQIAACGSRARVL
VLTTWDVDAHVVAALRAGASGFLLKDMRPGELVDAIRLTARGDALLAPAVLSRVLDRFLRSTPDPAPLPSVADLSGRERE
VLTLIGQALSNAEIAGRLRLSEATVKNHVTAVLRKLGLRDRVQAVVAAYDHGLVQPRRP

Nucleotide


Download         Length: 660 bp        

>NTDB_id=650962 OHS16_RS31275 WP_328540609.1 6902861..6903520(-) (vraR) [Streptomyces sp. NBC_00344]
ATGACGCTGCGCGTGGTGGTTGCTGACGACCAGGACCTGGTCCGTACCGGATTCCGCATGATCATCGACGCCAGGGATGA
CCTGGAGGTGGTCGGTGAGGCCGCCGACGGTCAGGAGGCGGTGCGGCTTACGGAAGAACTGGCACCGGACGTGGTGCTGA
TGGACGTACGTATGCCCGTCGTGGACGGCATCGAGGCGACCCGGCAGATCGCTGCGTGCGGCAGCCGGGCCCGGGTGCTC
GTGCTGACCACCTGGGACGTCGATGCGCACGTGGTCGCCGCCCTGCGGGCCGGGGCGAGCGGCTTCCTGCTGAAGGACAT
GCGCCCCGGTGAACTCGTCGACGCGATCCGCCTCACCGCCCGGGGCGACGCTCTGCTGGCGCCGGCCGTGCTGAGCCGCG
TTCTCGACCGGTTCCTGCGTTCCACGCCCGACCCCGCGCCGCTGCCCTCCGTCGCGGACCTCTCCGGCCGCGAGCGGGAG
GTACTCACCCTGATCGGGCAGGCGCTGTCGAACGCGGAGATCGCGGGGCGGTTGCGCCTGTCGGAGGCCACCGTCAAGAA
CCACGTCACCGCGGTGCTGCGCAAACTCGGCCTGCGCGACCGCGTCCAGGCCGTCGTCGCCGCGTACGACCATGGCCTCG
TGCAACCCCGTCGCCCCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-117)

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

40

98.174

0.393
  degU Bacillus subtilis subsp. subtilis str. 168

38.053

100

0.393