Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHS16_RS26835 Genome accession   NZ_CP107996
Coordinates   5918121..5918741 (-) Length   206 a.a.
NCBI ID   WP_328539818.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00344     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 5913121..5923741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHS16_RS26815 (OHS16_26810) - 5913801..5915030 (-) 1230 WP_328539814.1 DUF349 domain-containing protein -
  OHS16_RS26820 (OHS16_26815) - 5915183..5915971 (-) 789 WP_328539815.1 peptidylprolyl isomerase -
  OHS16_RS26825 (OHS16_26820) - 5916110..5916796 (+) 687 WP_328539816.1 MBL fold metallo-hydrolase -
  OHS16_RS26830 (OHS16_26825) hisS 5916806..5918068 (+) 1263 WP_328539817.1 histidine--tRNA ligase -
  OHS16_RS26835 (OHS16_26830) vraR 5918121..5918741 (-) 621 WP_328539818.1 response regulator transcription factor Regulator
  OHS16_RS26840 (OHS16_26835) - 5918738..5919970 (-) 1233 WP_328539819.1 sensor histidine kinase -
  OHS16_RS26845 (OHS16_26840) - 5919928..5920779 (-) 852 WP_328539820.1 ABC transporter permease -
  OHS16_RS26850 (OHS16_26845) - 5920776..5921630 (-) 855 WP_328539821.1 ABC transporter ATP-binding protein -
  OHS16_RS26855 (OHS16_26850) - 5921769..5922389 (+) 621 WP_328539822.1 vitamin K epoxide reductase family protein -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 21957.38 Da        Isoelectric Point: 5.4285

>NTDB_id=650955 OHS16_RS26835 WP_328539818.1 5918121..5918741(-) (vraR) [Streptomyces sp. NBC_00344]
MIRILLADDHPVVREGLRGMLAAEPDLEVVGEASSGPRAEALSAELRPDIVLMDLRMPGGGGAESIGRMTAAGLPCRVIV
LTTYETDGDILRAVEAGAAGYLLKDLARGELADAVRAAARGETVLAPSVAARLVDQLRSRPERPRLSERETAVLRLVAEG
CTNAEIGRRLFIGESTVKTHLLRVFGKLEVDDRTAAVTNAMRLGLL

Nucleotide


Download         Length: 621 bp        

>NTDB_id=650955 OHS16_RS26835 WP_328539818.1 5918121..5918741(-) (vraR) [Streptomyces sp. NBC_00344]
TTGATCCGGATTCTGCTCGCCGACGACCATCCCGTCGTACGGGAGGGGCTGCGCGGGATGCTGGCTGCCGAGCCGGATCT
CGAAGTCGTCGGCGAGGCGTCCAGTGGGCCGCGGGCCGAGGCGCTGTCGGCCGAACTGCGCCCGGACATCGTGCTGATGG
ACCTGCGGATGCCCGGCGGTGGCGGAGCCGAGTCGATCGGCAGAATGACCGCGGCCGGGCTGCCCTGCCGAGTGATCGTT
CTGACGACGTACGAGACCGACGGCGACATCCTGCGAGCCGTCGAAGCAGGGGCCGCCGGGTATCTGCTCAAGGATCTCGC
CCGTGGCGAGCTGGCCGACGCGGTCCGGGCGGCAGCCCGGGGCGAGACGGTGCTTGCGCCCTCGGTCGCCGCCCGGCTGG
TCGACCAGTTGCGCAGCAGGCCGGAGCGGCCGCGGCTTTCGGAGCGTGAGACCGCGGTCCTGCGTCTGGTGGCTGAGGGA
TGCACCAATGCCGAGATCGGCCGTCGTCTCTTCATCGGCGAGTCCACGGTCAAGACCCATCTGCTGCGGGTCTTCGGCAA
GTTGGAGGTCGACGACCGCACGGCGGCGGTGACGAACGCGATGCGGCTCGGGCTGCTGTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(146-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

39.806

100

0.398
  degU Bacillus subtilis subsp. subtilis str. 168

34.529

100

0.374