Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHS16_RS25145 Genome accession   NZ_CP107996
Coordinates   5565483..5566142 (+) Length   219 a.a.
NCBI ID   WP_328539521.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00344     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 5560483..5571142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHS16_RS25125 (OHS16_25115) - 5561395..5562132 (-) 738 WP_328539517.1 transglycosylase SLT domain-containing protein -
  OHS16_RS25130 (OHS16_25120) - 5562408..5563478 (-) 1071 WP_328539518.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase -
  OHS16_RS25135 (OHS16_25125) - 5563475..5564173 (-) 699 WP_328539519.1 SDR family oxidoreductase -
  OHS16_RS25140 (OHS16_25130) - 5564345..5565490 (+) 1146 WP_328539520.1 GAF domain-containing sensor histidine kinase -
  OHS16_RS25145 (OHS16_25135) vraR 5565483..5566142 (+) 660 WP_328539521.1 response regulator transcription factor Regulator
  OHS16_RS25150 (OHS16_25140) - 5566310..5566564 (+) 255 WP_328539522.1 chaplin -
  OHS16_RS25155 (OHS16_25145) - 5566648..5567436 (-) 789 WP_328539523.1 hypothetical protein -
  OHS16_RS25160 (OHS16_25150) - 5567559..5568356 (+) 798 WP_328539524.1 ABC transporter ATP-binding protein -
  OHS16_RS25165 (OHS16_25155) - 5568415..5568843 (+) 429 WP_328539525.1 NfeD family protein -
  OHS16_RS25170 (OHS16_25160) - 5568926..5569891 (+) 966 WP_328539526.1 SPFH domain-containing protein -
  OHS16_RS25175 (OHS16_25165) - 5570018..5570521 (-) 504 WP_328539527.1 HNH endonuclease -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 23735.21 Da        Isoelectric Point: 6.2433

>NTDB_id=650952 OHS16_RS25145 WP_328539521.1 5565483..5566142(+) (vraR) [Streptomyces sp. NBC_00344]
MADTAHRPKTAIRVLLVDDHQVVRRGLRTFLEIQDDIEVVGEASDGREGVARAEELRPDVVLMDIKMPGMDGIEALRKLA
ELANPAKVLVVTSFTEQRTVVPALRAGASGYVYKDVDPEALAGAIRSVHAGHVLLQPEVAGMLLSQEPVGGQGRGTTLTE
REREVLGLIADGRSNREIARSLVLSEKTVKTHVSNILMKLDLSDRTQAALWAVRHDAAG

Nucleotide


Download         Length: 660 bp        

>NTDB_id=650952 OHS16_RS25145 WP_328539521.1 5565483..5566142(+) (vraR) [Streptomyces sp. NBC_00344]
GTGGCTGACACCGCACACCGGCCGAAGACGGCCATCCGCGTCCTGCTGGTCGACGACCACCAGGTGGTCCGCCGCGGTCT
GCGCACCTTTCTGGAGATCCAGGACGACATCGAAGTGGTGGGGGAGGCGTCGGACGGCCGGGAAGGGGTGGCCCGCGCCG
AGGAACTGCGCCCGGACGTCGTACTGATGGACATCAAGATGCCCGGCATGGACGGCATCGAGGCGCTGCGCAAGCTCGCG
GAACTGGCCAACCCCGCCAAGGTCCTGGTGGTCACCAGCTTCACCGAACAGCGCACCGTGGTTCCCGCGCTGCGCGCAGG
CGCCTCCGGTTACGTCTACAAGGATGTCGACCCCGAAGCCCTGGCCGGTGCGATCCGCTCGGTACACGCCGGGCACGTCC
TCCTCCAGCCCGAGGTGGCCGGGATGCTGCTGTCCCAGGAGCCGGTGGGCGGCCAGGGCAGGGGGACCACACTGACCGAA
CGGGAGCGCGAGGTCCTCGGTCTCATCGCCGACGGACGCTCCAACCGGGAGATCGCCCGTTCTCTGGTCCTCTCCGAGAA
GACCGTCAAGACACACGTGTCGAACATCCTGATGAAACTGGACCTCTCCGACCGCACCCAGGCGGCGCTCTGGGCCGTAC
GCCACGACGCGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(14-125)

Bacterial regulatory proteins, luxR family (GerE)

(157-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

45.366

93.607

0.425
  degU Bacillus subtilis subsp. subtilis str. 168

39.64

100

0.402