Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHS16_RS14330 Genome accession   NZ_CP107996
Coordinates   3180577..3181269 (-) Length   230 a.a.
NCBI ID   WP_328537583.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00344     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3175577..3186269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHS16_RS14310 (OHS16_14310) - 3176478..3177332 (+) 855 WP_328537579.1 diacylglycerol kinase -
  OHS16_RS14315 (OHS16_14315) - 3177372..3177890 (-) 519 WP_328537580.1 MarR family transcriptional regulator -
  OHS16_RS14320 (OHS16_14320) - 3177984..3178901 (+) 918 WP_328537581.1 ABC transporter ATP-binding protein -
  OHS16_RS14325 (OHS16_14325) - 3178898..3180511 (+) 1614 WP_328537582.1 ABC transporter permease -
  OHS16_RS14330 (OHS16_14330) vraR 3180577..3181269 (-) 693 WP_328537583.1 response regulator transcription factor Regulator
  OHS16_RS14335 (OHS16_14335) - 3181266..3182567 (-) 1302 WP_328537584.1 histidine kinase -
  OHS16_RS14340 (OHS16_14340) - 3182673..3183503 (-) 831 WP_328537585.1 alpha/beta hydrolase -
  OHS16_RS14345 (OHS16_14345) kynU 3183559..3184722 (-) 1164 WP_328540844.1 kynureninase -
  OHS16_RS14350 (OHS16_14350) - 3184775..3185620 (-) 846 WP_328537586.1 tryptophan 2,3-dioxygenase family protein -
  OHS16_RS14355 (OHS16_14355) - 3185813..3186226 (-) 414 WP_328537587.1 DUF3151 domain-containing protein -

Sequence

Protein


Download         Length: 230 a.a.        Molecular weight: 24505.22 Da        Isoelectric Point: 4.7048

>NTDB_id=650928 OHS16_RS14330 WP_328537583.1 3180577..3181269(-) (vraR) [Streptomyces sp. NBC_00344]
MTAQPEGPAAAGTIRVLVVDDQMMVREGFSVLLNAMPGIEVIGEAVDGRQAVAQVAALRPDVVLMDIRMPQLNGIEATRE
IVAADSAAKVLVLTTFDLDEYVYEALRAGASGFLLKDASARQLADGVRVVASGEALLAPTVTKRLISEFSRLSDTPRQPS
LAQVGDLTERETEVLVQIAQGLSNAEIASRLVVAESTIKTHVSRILVKLGLRDRTQAAVFAYETGLVRPG

Nucleotide


Download         Length: 693 bp        

>NTDB_id=650928 OHS16_RS14330 WP_328537583.1 3180577..3181269(-) (vraR) [Streptomyces sp. NBC_00344]
ATGACCGCGCAGCCCGAAGGGCCCGCCGCGGCCGGCACCATCAGGGTGCTGGTCGTCGATGACCAGATGATGGTCCGGGA
GGGTTTCTCCGTCCTGCTCAACGCGATGCCCGGCATCGAGGTGATCGGCGAGGCCGTCGACGGCCGGCAGGCGGTGGCTC
AGGTCGCCGCCCTGCGCCCGGACGTCGTCCTGATGGACATCCGGATGCCCCAGCTCAACGGCATCGAGGCGACCCGCGAG
ATCGTGGCGGCGGACTCGGCGGCCAAGGTGCTGGTCCTGACCACCTTCGACCTCGACGAGTACGTCTACGAGGCGCTGCG
TGCGGGGGCCTCCGGTTTCCTCCTCAAGGACGCCTCGGCGCGCCAGCTGGCCGACGGCGTACGCGTGGTGGCATCCGGCG
AAGCGCTGCTGGCGCCCACCGTCACCAAGCGGCTGATCTCCGAGTTCTCCCGGCTGTCGGACACCCCCCGGCAGCCCTCG
CTCGCCCAGGTCGGCGACCTCACGGAGCGCGAGACCGAGGTGCTCGTACAGATCGCGCAGGGCCTGTCGAACGCCGAGAT
CGCGTCCCGGCTGGTCGTCGCCGAGTCCACGATCAAGACCCATGTGAGCCGGATCCTGGTGAAGCTCGGCCTGCGGGACA
GGACCCAGGCGGCGGTTTTCGCCTATGAGACGGGGCTGGTCAGGCCGGGGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(16-125)

Bacterial regulatory proteins, luxR family (GerE)

(167-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

43.519

93.913

0.409
  degU Bacillus subtilis subsp. subtilis str. 168

41.256

96.957

0.4