Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OHS16_RS14245 Genome accession   NZ_CP107996
Coordinates   3162101..3162700 (-) Length   199 a.a.
NCBI ID   WP_328537567.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00344     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3157101..3167700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHS16_RS14235 (OHS16_14235) - 3158807..3160600 (-) 1794 WP_328537565.1 adenylyl cyclase -
  OHS16_RS14240 (OHS16_14240) - 3161437..3162108 (-) 672 WP_328537566.1 DUF5063 domain-containing protein -
  OHS16_RS14245 (OHS16_14245) recR 3162101..3162700 (-) 600 WP_328537567.1 recombination mediator RecR Machinery gene
  OHS16_RS14250 (OHS16_14250) - 3162797..3163132 (-) 336 WP_328537568.1 YbaB/EbfC family nucleoid-associated protein -
  OHS16_RS14255 (OHS16_14255) - 3163441..3164154 (+) 714 WP_328540843.1 SLATT domain-containing protein -
  OHS16_RS14260 (OHS16_14260) - 3164569..3165219 (-) 651 WP_328537569.1 hypothetical protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21819.12 Da        Isoelectric Point: 4.9976

>NTDB_id=650927 OHS16_RS14245 WP_328537567.1 3162101..3162700(-) (recR) [Streptomyces sp. NBC_00344]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAHALLEVKDKVRFCSVCGNVAQEELCGICRDTRRDQSV
ICVVEEPKDVVAVERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGSITELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=650927 OHS16_RS14245 WP_328537567.1 3162101..3162700(-) (recR) [Streptomyces sp. NBC_00344]
GTGTACGAAGGCGTGGTCCAGGACCTCATCGACGAGTTGGGCAGGCTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTTCACATCCTCCAGGCCGAGCCGACCGACGTCCGCCGCCTCGCGCATGCACTGCTCGAAGTGAAGGACAAGGTCC
GGTTCTGCTCGGTGTGCGGCAATGTCGCGCAGGAGGAGCTCTGCGGTATCTGCCGGGACACCCGTCGTGACCAGTCGGTC
ATCTGTGTCGTCGAGGAGCCGAAGGACGTCGTCGCGGTCGAGCGGACCCGCGAATTCCGCGGCCGTTACCACGTGCTCGG
CGGCGCCATCAGCCCTATCGAGGGTGTCGGCCCCGACGACCTCCGGATCCGGGAACTGCTGGCCAGGCTCGCGGACGGCA
GCATCACCGAGCTCATCCTGGCGACCGACCCCAATCTGGAGGGTGAGGCCACGGCGACGTACCTCGCTCGCATGATCAAA
CCGATGGGTTTGAAGGTCACACGACTGGCCAGTGGTCTACCTGTTGGGGGAGACCTGGAATACGCGGACGAGGTCACGCT
CGGTCGTGCCTTTGAGGGGAGACGACTACTCGATGTCTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH)

(2-27)

RecR protein (RecR_ZnF)

(38-77)

Toprim domain (Toprim_4)

(79-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

56.633

98.492

0.558
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.639

97.487

0.533
  recR Streptococcus pneumoniae R6

47.423

97.487

0.462