Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHS16_RS06800 Genome accession   NZ_CP107996
Coordinates   1532671..1533339 (-) Length   222 a.a.
NCBI ID   WP_328536271.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00344     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1527671..1538339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHS16_RS06775 (OHS16_06775) - 1527921..1528853 (-) 933 WP_328536267.1 ABC transporter permease -
  OHS16_RS06780 (OHS16_06780) - 1528843..1529658 (-) 816 WP_328536268.1 ABC transporter ATP-binding protein -
  OHS16_RS06785 (OHS16_06785) - 1529803..1530525 (+) 723 WP_328536269.1 response regulator -
  OHS16_RS06790 (OHS16_06790) - 1530499..1532091 (-) 1593 WP_328540740.1 cation acetate symporter -
  OHS16_RS06795 (OHS16_06795) - 1532103..1532573 (-) 471 WP_328536270.1 DUF485 domain-containing protein -
  OHS16_RS06800 (OHS16_06800) vraR 1532671..1533339 (-) 669 WP_328536271.1 response regulator transcription factor Regulator
  OHS16_RS06805 (OHS16_06805) - 1533336..1534484 (-) 1149 WP_328536272.1 histidine kinase -
  OHS16_RS06810 (OHS16_06810) - 1534481..1535002 (-) 522 WP_328536273.1 DUF1453 domain-containing protein -
  OHS16_RS06815 (OHS16_06815) - 1535134..1537254 (-) 2121 WP_328536274.1 DNA topoisomerase IV subunit B -
  OHS16_RS06820 (OHS16_06820) - 1537686..1537916 (+) 231 WP_328536275.1 hypothetical protein -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 23751.32 Da        Isoelectric Point: 4.9502

>NTDB_id=650900 OHS16_RS06800 WP_328536271.1 1532671..1533339(-) (vraR) [Streptomyces sp. NBC_00344]
MTARVVVADDQSVVREGIVMLLGLLPGIEVVGAARDGLEAIALVAEHAPDVVLMDLRMPRCDGVEATRRIRAEYPSTQVV
VLTTFSDDQSLFPALRAGARGYLTKDAGGDEIVRAIEDVLAGQAGLSPSVQRMLVERVTAPPSAREMVELPDGLTSREAE
ILALIAEGLSNPEIARSLHISTATVKTHINNLFAKTGVRDRVQAMRYAYREGLALPPGTSVT

Nucleotide


Download         Length: 669 bp        

>NTDB_id=650900 OHS16_RS06800 WP_328536271.1 1532671..1533339(-) (vraR) [Streptomyces sp. NBC_00344]
ATGACAGCACGGGTAGTGGTGGCCGACGACCAGTCCGTTGTGCGCGAGGGAATTGTGATGCTGCTGGGGCTGCTGCCGGG
CATCGAGGTCGTCGGTGCGGCAAGGGACGGGCTGGAGGCGATCGCTCTGGTCGCCGAGCACGCCCCCGATGTGGTCCTCA
TGGACCTTCGGATGCCTCGCTGTGACGGTGTCGAGGCGACCCGTCGCATCCGGGCCGAGTATCCGTCCACCCAGGTCGTG
GTGCTCACGACGTTCTCGGATGACCAGTCGCTCTTTCCCGCGCTGCGCGCAGGGGCCCGTGGCTATCTCACCAAGGACGC
GGGCGGTGACGAGATCGTCCGTGCCATCGAGGACGTGCTGGCGGGGCAGGCGGGGCTGTCGCCCAGCGTGCAGCGGATGC
TTGTCGAGCGGGTCACTGCTCCGCCGTCCGCAAGGGAGATGGTGGAACTCCCCGACGGCCTCACTTCGCGCGAGGCCGAG
ATTCTGGCACTGATCGCCGAAGGCCTTTCCAACCCGGAGATCGCCCGATCCCTGCACATCTCCACGGCCACAGTGAAGAC
GCACATCAACAACCTGTTCGCCAAGACAGGTGTTCGCGACCGTGTGCAGGCCATGCGTTACGCCTATCGGGAGGGCCTCG
CCCTGCCACCGGGTACATCCGTCACCTAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(153-208)

Response regulator receiver domain (Response_reg)

(5-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

41.315

95.946

0.396
  degU Bacillus subtilis subsp. subtilis str. 168

38.009

99.55

0.378