Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   L3I92_RS07840 Genome accession   NZ_CP091412
Coordinates   1549523..1550509 (-) Length   328 a.a.
NCBI ID   WP_000959271.1    Uniprot ID   -
Organism   Staphylococcus aureus strain ATR-20003     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1544523..1555509
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3I92_RS07815 (L3I92_001561) - 1544783..1545130 (-) 348 WP_001242102.1 hypothetical protein -
  L3I92_RS07820 (L3I92_001562) - 1545316..1545909 (+) 594 WP_000224615.1 CYTH domain-containing protein -
  L3I92_RS07825 (L3I92_001563) - 1546013..1546378 (+) 366 WP_000214067.1 truncated hemoglobin YjbI -
  L3I92_RS07830 (L3I92_001564) yjbH 1546401..1547207 (+) 807 WP_000896697.1 protease adaptor protein YjbH -
  L3I92_RS07835 (L3I92_001565) pepF 1547667..1549475 (-) 1809 WP_000082725.1 oligoendopeptidase F -
  L3I92_RS07840 (L3I92_001566) coiA 1549523..1550509 (-) 987 WP_000959271.1 competence protein CoiA family protein Machinery gene
  L3I92_RS07845 (L3I92_001567) mecA 1550630..1551349 (-) 720 WP_001217728.1 adaptor protein MecA -
  L3I92_RS07850 (L3I92_001568) spxA 1551721..1552116 (-) 396 WP_000258003.1 transcriptional regulator SpxA -
  L3I92_RS07855 (L3I92_001569) trpS 1552411..1553400 (+) 990 WP_000448938.1 tryptophan--tRNA ligase -
  L3I92_RS07860 (L3I92_001570) opp4C 1553442..1554323 (-) 882 WP_001180265.1 oligopeptide ABC transporter permease -
  L3I92_RS07865 (L3I92_001571) opp4B 1554335..1555297 (-) 963 WP_000593421.1 oligopeptide ABC transporter permease -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38849.49 Da        Isoelectric Point: 9.7732

>NTDB_id=650889 L3I92_RS07840 WP_000959271.1 1549523..1550509(-) (coiA) [Staphylococcus aureus strain ATR-20003]
MLVALNEEKERVLATTALRKIKYFCPVCGKQVILKRGLKVISHFAHKHLTEQKCFNNESFKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSIFINPITRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLLSDNLNYFKLKKFIVALESKTAIIEKLINNYLNISSNR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=650889 L3I92_RS07840 WP_000959271.1 1549523..1550509(-) (coiA) [Staphylococcus aureus strain ATR-20003]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGATAAAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAACGGAACAAAAAT
GTTTTAATAATGAATCGTTTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAACCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATATTTATTAATCCAATCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGGAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATACTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTACTAAGTGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTAGTTCAAATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-304)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus N315

96.037

100

0.96
  coiA Staphylococcus aureus MW2

95.732

100

0.957