Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHA88_RS41870 Genome accession   NZ_CP107985
Coordinates   9317852..9318487 (+) Length   211 a.a.
NCBI ID   WP_267007306.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00353     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 9312852..9323487
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA88_RS41845 (OHA88_41905) - 9313561..9313893 (-) 333 WP_328629440.1 DUF6233 domain-containing protein -
  OHA88_RS41850 (OHA88_41910) - 9313896..9314237 (-) 342 WP_328629441.1 hypothetical protein -
  OHA88_RS41855 (OHA88_41915) - 9314696..9315379 (-) 684 WP_328629442.1 ABC transporter ATP-binding protein -
  OHA88_RS41860 (OHA88_41920) - 9315376..9316464 (-) 1089 WP_328629934.1 ABC transporter permease -
  OHA88_RS41865 (OHA88_41925) - 9316635..9317855 (+) 1221 WP_328629443.1 sensor histidine kinase -
  OHA88_RS41870 (OHA88_41930) vraR 9317852..9318487 (+) 636 WP_267007306.1 response regulator transcription factor Regulator
  OHA88_RS41875 (OHA88_41935) - 9318578..9320167 (-) 1590 WP_328629935.1 FAD-dependent monooxygenase -
  OHA88_RS41880 (OHA88_41940) - 9320245..9320874 (-) 630 WP_328629444.1 TetR family transcriptional regulator -
  OHA88_RS41885 (OHA88_41945) - 9321348..9322079 (+) 732 WP_328629445.1 HAD family hydrolase -
  OHA88_RS41890 (OHA88_41950) - 9322157..9322672 (+) 516 Protein_8281 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22165.39 Da        Isoelectric Point: 5.7510

>NTDB_id=650889 OHA88_RS41870 WP_267007306.1 9317852..9318487(+) (vraR) [Streptomyces sp. NBC_00353]
MTDTPIRLLLADDHPVVRAGLRAVLETEAGIEVVAEAPTAEEAVARAAQGDIDVVLMDLQFGKGMNGAEATAAITARPQA
PRVLIVTTYDTDADTLRAIEAGATGYLLKDAPPEDLAAAVRTAAAGRTTLAPTVADRLMNRLRTPGTTLTRRETEVLALV
AVGLSNQAIGNRLHLTEGTVKSHLARIYVKLGVDSRTAAVATATELGLIRR

Nucleotide


Download         Length: 636 bp        

>NTDB_id=650889 OHA88_RS41870 WP_267007306.1 9317852..9318487(+) (vraR) [Streptomyces sp. NBC_00353]
GTGACCGACACCCCCATCCGCCTGCTCCTGGCCGACGACCACCCCGTCGTGCGCGCAGGGCTGCGCGCCGTGCTGGAGAC
CGAAGCCGGCATCGAAGTGGTGGCCGAAGCCCCAACCGCCGAGGAAGCCGTCGCCCGCGCCGCCCAGGGCGACATCGATG
TCGTTCTCATGGACCTTCAGTTCGGCAAGGGAATGAACGGTGCCGAGGCCACCGCCGCCATCACCGCACGGCCCCAGGCC
CCCCGCGTGCTGATCGTCACCACCTACGACACCGACGCCGACACCCTCCGCGCCATCGAAGCCGGCGCCACCGGCTACCT
CCTCAAGGACGCCCCACCCGAGGACCTGGCCGCCGCCGTACGCACCGCCGCGGCAGGCCGCACCACACTGGCACCCACCG
TCGCGGACCGGCTGATGAACCGACTGCGTACTCCCGGCACCACCCTGACCCGGCGCGAGACCGAAGTTCTCGCGCTGGTC
GCCGTGGGCCTGTCCAACCAGGCCATCGGCAACCGGCTCCACCTCACCGAAGGGACGGTCAAGTCCCACCTGGCCCGTAT
CTACGTGAAACTCGGCGTCGACTCCCGAACCGCTGCCGTCGCCACCGCCACCGAACTCGGCCTCATCCGGCGATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-202)

Response regulator receiver domain (Response_reg)

(9-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.942

98.578

0.384
  degU Bacillus subtilis subsp. subtilis str. 168

34.071

100

0.365