Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   L3I92_RS06560 Genome accession   NZ_CP091412
Coordinates   1288168..1289040 (-) Length   290 a.a.
NCBI ID   WP_064277126.1    Uniprot ID   -
Organism   Staphylococcus aureus strain ATR-20003     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1283168..1294040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3I92_RS06550 (L3I92_001309) trmFO 1284456..1285763 (-) 1308 WP_000195251.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  L3I92_RS06555 (L3I92_001310) topA 1285919..1287994 (-) 2076 WP_001622395.1 type I DNA topoisomerase -
  L3I92_RS06560 (L3I92_001311) dprA 1288168..1289040 (-) 873 WP_064277126.1 DNA-processing protein DprA Machinery gene
  L3I92_RS06565 (L3I92_001312) fmhC 1289212..1290456 (-) 1245 WP_000672866.1 FemA/FemB family glycyltransferase FmhC -
  L3I92_RS06570 (L3I92_001313) - 1290484..1291602 (-) 1119 WP_001041653.1 LysM peptidoglycan-binding domain-containing protein -
  L3I92_RS06575 (L3I92_001314) sucD 1291831..1292739 (-) 909 WP_000110253.1 succinate--CoA ligase subunit alpha -
  L3I92_RS06580 (L3I92_001315) sucC 1292761..1293927 (-) 1167 WP_001020801.1 ADP-forming succinate--CoA ligase subunit beta -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33550.02 Da        Isoelectric Point: 9.6905

>NTDB_id=650887 L3I92_RS06560 WP_064277126.1 1288168..1289040(-) (dprA) [Staphylococcus aureus strain ATR-20003]
MIRLFLLKLYWAHFSTKQIHQFLMAYPNVIKEGGRKKDSYLCEWVNREENVHLLRKYYAFIKLNHNDIIKELQKLKVSYI
TYMDTEYPVLLKEIYQFPLLLFYKGNIKLINNMHHLAVVGARDSTSYTQQSLEFLLSNDKSKYLTIVSGLAQGADAMAHQ
IALKYNLPTIAVLAFGHQTHYPKSTLALRNKIEEKGLVISEYPPHTLIAKYRFPERNRIISGLSKGVLITEAKEQSGSHI
TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDIFEDYYI

Nucleotide


Download         Length: 873 bp        

>NTDB_id=650887 L3I92_RS06560 WP_064277126.1 1288168..1289040(-) (dprA) [Staphylococcus aureus strain ATR-20003]
TTGATTAGACTATTTTTGCTTAAGTTATACTGGGCACACTTTTCGACTAAACAAATTCATCAATTTTTAATGGCATATCC
TAATGTAATTAAAGAGGGGGGCAGAAAAAAAGATAGTTATTTATGTGAATGGGTGAATAGGGAAGAAAATGTTCATTTAT
TACGTAAATACTATGCTTTTATAAAACTTAATCATAACGATATTATTAAAGAACTGCAGAAATTAAAAGTAAGTTACATT
ACATATATGGATACTGAATACCCAGTGCTATTAAAAGAAATATATCAATTTCCATTACTTCTTTTCTATAAAGGAAACAT
CAAATTAATAAATAATATGCATCATTTGGCAGTAGTAGGTGCAAGAGATTCTACAAGTTATACCCAACAGTCTTTAGAAT
TTTTATTATCAAATGATAAAAGCAAATATTTAACAATTGTTTCCGGCCTTGCTCAAGGAGCTGATGCAATGGCACATCAA
ATAGCTTTAAAATACAATCTCCCTACAATAGCAGTTTTAGCCTTTGGCCATCAAACGCATTATCCCAAAAGTACATTAGC
ATTAAGAAATAAAATAGAAGAAAAAGGTTTAGTTATATCCGAATATCCACCACATACACTAATTGCTAAATATAGATTTC
CTGAGCGCAATAGAATTATCAGCGGTTTGTCAAAAGGGGTTTTAATTACTGAGGCTAAGGAACAAAGTGGCAGTCACATC
ACGATAGATTTTGCATTAGAGCAAAATAGAAATGTTTATGTTTTACCTGGATCTATGTTTAATCCTATGACAAAAGGTAA
TTTATTACGTATCCAAGAAGGAGCTAAGGTAGTATTAAACGCTAATGATATATTTGAAGACTACTATATTTAA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

98.276

100

0.983
  dprA Staphylococcus aureus N315

97.931

100

0.979