Detailed information
Bioinformatically predicted
Overview
| Name | pilR | Type | Regulator |
| Locus tag | TBH_RS12200 | Genome accession | NZ_AP012273 |
| Coordinates | 2563152..2564531 (+) | Length | 459 a.a. |
| NCBI ID | WP_041068725.1 | Uniprot ID | A0A7U6JIG2 |
| Organism | Thiolapillus brandeum strain Hiromi | ||
| Function | regulate pilin expression (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2558152..2569531
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| TBH_RS12180 (TBH_C2362) | - | 2559069..2559407 (-) | 339 | WP_041071181.1 | P-II family nitrogen regulator | - |
| TBH_RS12185 (TBH_C2363) | - | 2559426..2561033 (-) | 1608 | WP_041068715.1 | NAD+ synthase | - |
| TBH_RS12190 (TBH_C2364) | - | 2561308..2561517 (+) | 210 | WP_041068717.1 | PP0621 family protein | - |
| TBH_RS12195 (TBH_C2365) | - | 2561532..2563130 (+) | 1599 | WP_041068719.1 | sensor histidine kinase | - |
| TBH_RS12200 (TBH_C2366) | pilR | 2563152..2564531 (+) | 1380 | WP_041068725.1 | sigma-54-dependent transcriptional regulator | Regulator |
| TBH_RS12205 (TBH_C2367) | - | 2564546..2566573 (-) | 2028 | WP_041068726.1 | autotransporter outer membrane beta-barrel domain-containing protein | - |
| TBH_RS12210 (TBH_C2368) | - | 2566663..2567670 (+) | 1008 | WP_052470157.1 | MBL fold metallo-hydrolase | - |
| TBH_RS12215 (TBH_C2369) | - | 2567664..2568443 (-) | 780 | WP_041068727.1 | DNA-binding domain-containing protein | - |
| TBH_RS12220 (TBH_C2370) | - | 2568440..2569276 (-) | 837 | WP_041068728.1 | DUF692 domain-containing protein | - |
Sequence
Protein
Download Length: 459 a.a. Molecular weight: 50359.33 Da Isoelectric Point: 4.6213
>NTDB_id=65088 TBH_RS12200 WP_041068725.1 2563152..2564531(+) (pilR) [Thiolapillus brandeum strain Hiromi]
MDNPTALIVDDEPDIRELLELTLQRMDIDTVTAADLGQARNALATRNFQLCLADMRLPDGDGIDLVREIHEEHPGTPVAM
ITAHGNMETAIQALKAGAFDFVSKPVDLSVLRNLVVTALKLQEPGKQQICEDDQEDSQCPLRGASAAMDKVRSLISKLAR
SQAPVHITGESGTGKELAARLIHQLGPRNDNPFVAVNCGAIPHELMESELFGYKKGAFTGAVADKTGLFVEANGGTLFLD
EVADLPLSMQVKLLRVIQEKMVRPVGATEELPINVRIISATHQNLAQRVQEEAFRQDLYYRLNVIELHMPSLRERPEDIP
GLTQHLLENIASNYQQPVPELQPAALDALQHHPFPGNVRELENILERAFALCDDGIITLDDLGMLDLSVSPETGKAGQAR
LPGENLEDYLARIEKDILLEALEETGGNKTSAASRLGISFRSFRYRLGKLGIAGKDDEK
MDNPTALIVDDEPDIRELLELTLQRMDIDTVTAADLGQARNALATRNFQLCLADMRLPDGDGIDLVREIHEEHPGTPVAM
ITAHGNMETAIQALKAGAFDFVSKPVDLSVLRNLVVTALKLQEPGKQQICEDDQEDSQCPLRGASAAMDKVRSLISKLAR
SQAPVHITGESGTGKELAARLIHQLGPRNDNPFVAVNCGAIPHELMESELFGYKKGAFTGAVADKTGLFVEANGGTLFLD
EVADLPLSMQVKLLRVIQEKMVRPVGATEELPINVRIISATHQNLAQRVQEEAFRQDLYYRLNVIELHMPSLRERPEDIP
GLTQHLLENIASNYQQPVPELQPAALDALQHHPFPGNVRELENILERAFALCDDGIITLDDLGMLDLSVSPETGKAGQAR
LPGENLEDYLARIEKDILLEALEETGGNKTSAASRLGISFRSFRYRLGKLGIAGKDDEK
Nucleotide
Download Length: 1380 bp
>NTDB_id=65088 TBH_RS12200 WP_041068725.1 2563152..2564531(+) (pilR) [Thiolapillus brandeum strain Hiromi]
ATGGACAATCCCACAGCCCTGATCGTTGATGATGAACCGGACATCCGGGAACTCCTTGAACTGACCCTGCAACGCATGGA
TATCGACACCGTAACCGCTGCCGACCTGGGTCAGGCCAGGAACGCCCTGGCCACACGGAACTTCCAACTCTGCCTTGCGG
ACATGCGTCTTCCCGATGGAGACGGGATCGACCTGGTCCGGGAGATTCACGAGGAACACCCGGGAACCCCTGTTGCCATG
ATTACTGCCCACGGCAATATGGAAACTGCCATACAGGCACTCAAAGCCGGCGCATTCGATTTTGTCTCCAAGCCTGTGGA
TCTTTCCGTTCTGCGCAACCTGGTCGTTACCGCCCTGAAACTTCAGGAACCGGGAAAGCAGCAGATCTGCGAGGATGATC
AGGAAGATTCTCAATGCCCTTTACGCGGTGCTTCCGCTGCCATGGACAAGGTACGCAGCCTTATCAGCAAACTGGCACGC
AGCCAGGCTCCTGTGCATATTACCGGAGAGTCGGGCACGGGAAAGGAACTGGCAGCCCGTCTGATTCATCAACTGGGCCC
AAGAAACGACAACCCGTTCGTTGCAGTCAACTGCGGCGCCATCCCTCATGAGCTCATGGAAAGCGAGTTGTTCGGATACA
AGAAAGGCGCCTTTACCGGGGCCGTTGCCGACAAGACCGGCCTGTTCGTGGAAGCCAATGGCGGTACCCTGTTCCTGGAC
GAGGTGGCCGACCTGCCCCTGTCCATGCAGGTAAAGCTTCTGCGCGTTATTCAGGAAAAGATGGTGCGGCCTGTCGGAGC
CACCGAAGAGCTGCCTATCAATGTACGCATCATCAGCGCCACCCACCAGAACCTCGCCCAGCGTGTGCAGGAAGAGGCAT
TCCGCCAGGATCTGTACTACCGGCTCAACGTCATCGAACTGCACATGCCGTCTTTGCGTGAACGTCCCGAGGACATTCCC
GGGTTGACACAACACCTGCTGGAAAACATCGCCAGCAACTACCAGCAACCCGTGCCGGAACTCCAGCCGGCCGCCCTGGA
TGCGCTCCAGCACCACCCCTTTCCAGGCAACGTACGCGAACTGGAGAACATCCTGGAACGAGCCTTTGCTCTTTGTGATG
ATGGCATCATCACCCTGGATGATTTGGGCATGCTGGACCTATCGGTCAGTCCGGAGACGGGCAAGGCCGGCCAGGCGCGC
CTGCCGGGAGAAAACCTGGAAGACTACCTGGCCAGGATCGAGAAAGACATTCTGCTCGAAGCTCTGGAAGAAACCGGCGG
CAACAAGACCTCCGCCGCCAGCCGCCTGGGCATCAGCTTCCGTTCCTTCCGGTATCGTCTGGGCAAGCTGGGTATCGCAG
GCAAAGACGACGAAAAATAG
ATGGACAATCCCACAGCCCTGATCGTTGATGATGAACCGGACATCCGGGAACTCCTTGAACTGACCCTGCAACGCATGGA
TATCGACACCGTAACCGCTGCCGACCTGGGTCAGGCCAGGAACGCCCTGGCCACACGGAACTTCCAACTCTGCCTTGCGG
ACATGCGTCTTCCCGATGGAGACGGGATCGACCTGGTCCGGGAGATTCACGAGGAACACCCGGGAACCCCTGTTGCCATG
ATTACTGCCCACGGCAATATGGAAACTGCCATACAGGCACTCAAAGCCGGCGCATTCGATTTTGTCTCCAAGCCTGTGGA
TCTTTCCGTTCTGCGCAACCTGGTCGTTACCGCCCTGAAACTTCAGGAACCGGGAAAGCAGCAGATCTGCGAGGATGATC
AGGAAGATTCTCAATGCCCTTTACGCGGTGCTTCCGCTGCCATGGACAAGGTACGCAGCCTTATCAGCAAACTGGCACGC
AGCCAGGCTCCTGTGCATATTACCGGAGAGTCGGGCACGGGAAAGGAACTGGCAGCCCGTCTGATTCATCAACTGGGCCC
AAGAAACGACAACCCGTTCGTTGCAGTCAACTGCGGCGCCATCCCTCATGAGCTCATGGAAAGCGAGTTGTTCGGATACA
AGAAAGGCGCCTTTACCGGGGCCGTTGCCGACAAGACCGGCCTGTTCGTGGAAGCCAATGGCGGTACCCTGTTCCTGGAC
GAGGTGGCCGACCTGCCCCTGTCCATGCAGGTAAAGCTTCTGCGCGTTATTCAGGAAAAGATGGTGCGGCCTGTCGGAGC
CACCGAAGAGCTGCCTATCAATGTACGCATCATCAGCGCCACCCACCAGAACCTCGCCCAGCGTGTGCAGGAAGAGGCAT
TCCGCCAGGATCTGTACTACCGGCTCAACGTCATCGAACTGCACATGCCGTCTTTGCGTGAACGTCCCGAGGACATTCCC
GGGTTGACACAACACCTGCTGGAAAACATCGCCAGCAACTACCAGCAACCCGTGCCGGAACTCCAGCCGGCCGCCCTGGA
TGCGCTCCAGCACCACCCCTTTCCAGGCAACGTACGCGAACTGGAGAACATCCTGGAACGAGCCTTTGCTCTTTGTGATG
ATGGCATCATCACCCTGGATGATTTGGGCATGCTGGACCTATCGGTCAGTCCGGAGACGGGCAAGGCCGGCCAGGCGCGC
CTGCCGGGAGAAAACCTGGAAGACTACCTGGCCAGGATCGAGAAAGACATTCTGCTCGAAGCTCTGGAAGAAACCGGCGG
CAACAAGACCTCCGCCGCCAGCCGCCTGGGCATCAGCTTCCGTTCCTTCCGGTATCGTCTGGGCAAGCTGGGTATCGCAG
GCAAAGACGACGAAAAATAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilR | Pseudomonas aeruginosa PAK |
59.071 |
98.475 |
0.582 |
| pilR | Acinetobacter baumannii strain A118 |
48.817 |
100 |
0.495 |