Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OHA88_RS26300 Genome accession   NZ_CP107985
Coordinates   5802614..5804026 (-) Length   470 a.a.
NCBI ID   WP_267004537.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00353     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5797614..5809026
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA88_RS26275 (OHA88_26315) - 5797864..5798514 (-) 651 WP_267004532.1 SigE family RNA polymerase sigma factor -
  OHA88_RS26280 (OHA88_26320) - 5798690..5799592 (-) 903 WP_328627300.1 A/G-specific adenine glycosylase -
  OHA88_RS26285 (OHA88_26325) - 5799718..5800224 (-) 507 WP_328629797.1 phosphatase PAP2 family protein -
  OHA88_RS26290 (OHA88_26330) - 5800445..5801254 (+) 810 WP_328627301.1 hypothetical protein -
  OHA88_RS26295 (OHA88_26335) disA 5801409..5802533 (-) 1125 WP_030972387.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OHA88_RS26300 (OHA88_26340) radA/sms 5802614..5804026 (-) 1413 WP_267004537.1 DNA repair protein RadA Machinery gene
  OHA88_RS26305 (OHA88_26345) - 5804266..5806050 (+) 1785 WP_328627302.1 hypothetical protein -
  OHA88_RS26310 (OHA88_26350) - 5806082..5806951 (-) 870 WP_267004539.1 hypothetical protein -
  OHA88_RS26315 (OHA88_26355) - 5806992..5807939 (+) 948 WP_326604436.1 Ppx/GppA phosphatase family protein -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 49634.69 Da        Isoelectric Point: 8.2605

>NTDB_id=650859 OHA88_RS26300 WP_267004537.1 5802614..5804026(-) (radA/sms) [Streptomyces sp. NBC_00353]
MAARTKSAKDRPSYRCTECGWTTAKWLGRCPECQAWGTVEEFGGAPAVRTTAAGRVSSAALPIGQVDSRQATARPTGVDE
LDRVLGGGLVPGAVVLVAGEPGVGKSTLLLDVAAKSASDEHRTLYVTAEESASQVRLRADRIRAINDHLYLAAETDLSAV
LGHLDAVKPSLLVLDSVQTVASPEIEGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLS
FEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGRRPLVAEVQALTVDSQ
IPSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVG
LAGEVRRVTGVQRRLAEAHRLGFTHALVPTDPGRVPSGMKVTEVANMGDALRVLPRRSRTEAPREADARR

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=650859 OHA88_RS26300 WP_267004537.1 5802614..5804026(-) (radA/sms) [Streptomyces sp. NBC_00353]
ATGGCTGCCCGTACAAAATCCGCGAAGGACCGGCCGTCCTACCGCTGCACCGAGTGCGGCTGGACGACCGCCAAGTGGCT
CGGCCGATGCCCCGAATGCCAGGCGTGGGGGACGGTCGAGGAGTTCGGCGGCGCCCCTGCCGTGCGGACGACGGCGGCCG
GCCGCGTCAGCTCGGCCGCACTCCCCATCGGCCAGGTCGACAGCCGGCAGGCCACCGCCCGGCCGACCGGGGTCGACGAG
CTGGACCGGGTGCTCGGCGGCGGGCTGGTCCCCGGCGCCGTGGTGCTGGTCGCGGGCGAGCCGGGCGTCGGCAAGTCGAC
GCTGCTGCTGGACGTGGCCGCCAAGTCCGCCAGCGACGAGCACCGCACCCTCTATGTCACCGCGGAGGAGTCCGCGAGCC
AGGTGCGGCTGCGCGCCGACCGGATCCGGGCGATCAACGACCACCTCTACCTCGCCGCCGAGACCGACCTCTCCGCGGTC
CTCGGCCATCTGGACGCGGTCAAGCCGTCCCTGCTCGTCCTCGACTCCGTGCAGACCGTCGCCTCGCCCGAGATCGAGGG
CGCACCCGGCGGGATGGCGCAGGTCCGGGAGGTGGCCGGTGCGCTCATCCGCGCCTCCAAGGAGCGCGGCATGTCCACGC
TGCTGGTCGGCCATGTCACCAAGGACGGCGCCATCGCCGGGCCACGGCTGCTGGAGCACCTCGTCGATGTGGTGCTGTCC
TTCGAGGGCGACCGGCATGCGCGCCTCCGGCTGGTCCGGGGCGTGAAGAACCGGTACGGGGCGACCGACGAGGTCGGCTG
TTTCGAACTGCACGACGAGGGCATCACGGGCCTCGCCGACCCGTCCGGTCTCTTCCTCACCCGGCGCGACGAGCCCGTGC
CGGGCACCTGTCTGACGGTCACGCTGGAGGGGCGGCGCCCGCTCGTCGCCGAAGTGCAGGCGCTGACGGTCGATTCGCAG
ATCCCCTCCCCGCGGCGCACCACCTCCGGTCTGGAGACGTCCCGGGTCTCGATGATGCTGGCGGTTCTGGAGCAGCGCGG
CCGGATCAGCGCACTCGGCAAGCGGGACATCTACAGCGCCACGGTCGGCGGCGTGAAGCTTTCCGAACCCGCCGCGGACC
TTGCGATCGCGCTTGCGCTGGCCAGCGCGGCAAGCGACACACCGCTGCCCAAGAACCTGGTGGCGATCGGCGAGGTGGGC
CTCGCGGGCGAGGTCAGAAGGGTCACGGGGGTGCAGCGGAGACTGGCCGAAGCACACCGTCTGGGCTTCACCCACGCGCT
GGTCCCGACCGACCCGGGGAGGGTTCCATCCGGTATGAAGGTCACGGAAGTCGCCAACATGGGCGACGCGCTCAGAGTGC
TCCCGCGCCGGTCTCGTACAGAGGCCCCACGGGAGGCCGACGCACGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(82-223)

Subunit ChlI of Mg-chelatase (ChlI)

(370-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.488

96.383

0.419
  radA Streptococcus pneumoniae Rx1

42.163

96.383

0.406
  radA Streptococcus pneumoniae D39

42.163

96.383

0.406
  radA Streptococcus pneumoniae R6

42.163

96.383

0.406
  radA Streptococcus pneumoniae TIGR4

42.163

96.383

0.406
  radA Streptococcus mitis SK321

43.59

91.277

0.398
  radA Streptococcus mitis NCTC 12261

43.59

91.277

0.398