Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OHA88_RS22860 Genome accession   NZ_CP107985
Coordinates   5062231..5062830 (-) Length   199 a.a.
NCBI ID   WP_267003617.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00353     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5057231..5067830
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA88_RS22840 (OHA88_22875) - 5057972..5058547 (-) 576 WP_267008025.1 SigE family RNA polymerase sigma factor -
  OHA88_RS22845 (OHA88_22880) - 5058927..5059991 (-) 1065 WP_328626869.1 aspartate-semialdehyde dehydrogenase -
  OHA88_RS22850 (OHA88_22885) - 5059988..5061259 (-) 1272 WP_267003613.1 aspartate kinase -
  OHA88_RS22855 (OHA88_22890) - 5061479..5062138 (-) 660 WP_267003615.1 DUF5063 domain-containing protein -
  OHA88_RS22860 (OHA88_22895) recR 5062231..5062830 (-) 600 WP_267003617.1 recombination mediator RecR Machinery gene
  OHA88_RS22865 (OHA88_22900) - 5062904..5063239 (-) 336 WP_267008026.1 YbaB/EbfC family nucleoid-associated protein -
  OHA88_RS22870 (OHA88_22905) - 5063596..5064429 (+) 834 WP_328626870.1 SLATT domain-containing protein -
  OHA88_RS22875 (OHA88_22910) - 5064495..5065145 (-) 651 WP_328626871.1 hypothetical protein -
  OHA88_RS22880 (OHA88_22915) - 5065279..5066010 (-) 732 WP_328626872.1 GntR family transcriptional regulator -
  OHA88_RS22885 (OHA88_22920) - 5066123..5067505 (-) 1383 WP_267003625.1 aspartate aminotransferase family protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21904.19 Da        Isoelectric Point: 5.1721

>NTDB_id=650849 OHA88_RS22860 WP_267003617.1 5062231..5062830(-) (recR) [Streptomyces sp. NBC_00353]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAHALLEVKDKVRFCSVCGNVAQEEQCGICRDARRDRTV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLSDGSITELILATDPNLEGEATATYLARMIK
PMGLRVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=650849 OHA88_RS22860 WP_267003617.1 5062231..5062830(-) (recR) [Streptomyces sp. NBC_00353]
TTGTACGAAGGCGTGGTCCAGGACCTCATCGACGAACTGGGCAGGCTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTGCAGGCCGAGCCCACCGACGTTCGCCGTCTCGCCCATGCCCTCCTGGAGGTCAAGGACAAGGTCC
GGTTCTGCTCGGTGTGCGGCAATGTCGCGCAGGAGGAGCAGTGCGGGATCTGCCGCGACGCGCGTCGCGACCGGACGGTG
ATCTGTGTGGTCGAGGAGCCGAAGGATGTCGTGGCGATCGAGCGGACCCGTGAGTTCCGCGGCCGTTACCACGTCCTCGG
CGGGGCGATCAGCCCGATCGAGGGCGTCGGTCCGGACGATCTGCGCATCCGTGAGCTGCTGGCGAGGCTCTCCGACGGGT
CCATCACGGAACTGATCCTGGCCACCGACCCCAACCTGGAGGGCGAGGCCACCGCGACGTACCTGGCGCGGATGATCAAG
CCGATGGGCCTGCGGGTGACGCGGCTGGCCAGCGGGCTGCCGGTGGGCGGCGACCTCGAGTACGCGGACGAGGTCACCCT
GGGCCGCGCGTTCGAGGGGAGGCGGCTGCTCGATGTGTAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH)

(2-27)

RecR protein (RecR_ZnF)

(38-77)

Toprim domain (Toprim_4)

(80-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.102

98.492

0.543
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.124

97.487

0.528
  recR Streptococcus pneumoniae R6

46.907

97.487

0.457