Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHA88_RS13420 Genome accession   NZ_CP107985
Coordinates   2918681..2919352 (-) Length   223 a.a.
NCBI ID   WP_328625692.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00353     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2913681..2924352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA88_RS13405 (OHA88_13435) - 2914873..2915712 (+) 840 WP_328625690.1 TIM barrel protein -
  OHA88_RS13410 (OHA88_13440) - 2915761..2916660 (+) 900 WP_267000385.1 2-hydroxy-3-oxopropionate reductase -
  OHA88_RS13415 (OHA88_13445) - 2916857..2918314 (+) 1458 WP_328625691.1 catalase -
  OHA88_RS13420 (OHA88_13450) vraR 2918681..2919352 (-) 672 WP_328625692.1 response regulator transcription factor Regulator
  OHA88_RS13425 (OHA88_13455) - 2919349..2920668 (-) 1320 WP_328625693.1 sensor histidine kinase -
  OHA88_RS13430 (OHA88_13460) - 2920679..2921842 (-) 1164 WP_328625694.1 acyltransferase -
  OHA88_RS13435 (OHA88_13465) - 2921835..2922824 (-) 990 WP_328625695.1 alpha/beta hydrolase -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 23942.74 Da        Isoelectric Point: 4.8204

>NTDB_id=650823 OHA88_RS13420 WP_328625692.1 2918681..2919352(-) (vraR) [Streptomyces sp. NBC_00353]
MTTIRVLIADDQVMVRQGFTVLLDAEPGVEVVGQAVDGLDAVSKVAELAPDVVLMDVRMPVLGGIEATRRITSPHDAQVK
VLILTTFDLDEYVYEALRAGASGFLLKDASVEELVHAVRVVAAGDALLAPNITKRLIAEFSRMTAAPRAPLMDRVGDLTE
RETEVLSLIAQGLSNAEIATRLVVAEQTAKTHVSRILAKLGLRDRTQAAVFAYETGLVRPTGC

Nucleotide


Download         Length: 672 bp        

>NTDB_id=650823 OHA88_RS13420 WP_328625692.1 2918681..2919352(-) (vraR) [Streptomyces sp. NBC_00353]
GTGACGACCATCCGCGTACTGATCGCCGACGACCAGGTGATGGTCCGCCAGGGATTTACCGTGCTGCTCGACGCGGAGCC
CGGCGTCGAGGTCGTCGGTCAGGCGGTGGACGGTCTCGACGCCGTGTCCAAGGTCGCCGAACTCGCCCCGGATGTGGTCC
TGATGGATGTCCGGATGCCCGTGCTCGGCGGCATCGAGGCGACCCGCCGCATCACGTCACCGCACGACGCCCAGGTCAAG
GTGCTCATCCTGACCACCTTCGATCTCGACGAGTACGTGTACGAGGCGCTGCGCGCGGGCGCGTCCGGCTTTCTGCTCAA
GGACGCTTCGGTCGAGGAACTGGTCCATGCGGTACGGGTGGTGGCAGCAGGTGACGCGCTGCTCGCCCCGAACATCACCA
AGCGGCTGATCGCCGAGTTCTCCCGGATGACGGCGGCGCCTCGGGCCCCGCTCATGGACCGGGTCGGTGATCTGACGGAG
CGTGAGACCGAGGTGCTTTCCCTGATCGCGCAGGGCCTGTCGAACGCGGAGATCGCCACGCGCCTGGTGGTGGCGGAGCA
GACGGCGAAGACCCATGTGAGCCGGATCCTGGCCAAGCTGGGGCTGCGCGACCGGACCCAGGCGGCGGTCTTCGCGTACG
AGACGGGCCTGGTACGCCCGACCGGCTGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(6-119)

Bacterial regulatory proteins, luxR family (GerE)

(158-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

42.466

98.206

0.417
  degU Bacillus subtilis subsp. subtilis str. 168

40.529

100

0.413