Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHA88_RS07260 Genome accession   NZ_CP107985
Coordinates   1508472..1509131 (+) Length   219 a.a.
NCBI ID   WP_328624736.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00353     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1503472..1514131
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA88_RS07240 (OHA88_07265) - 1504095..1504874 (-) 780 WP_328629615.1 helix-turn-helix transcriptional regulator -
  OHA88_RS07245 (OHA88_07270) - 1505068..1506315 (-) 1248 WP_328624733.1 amino acid decarboxylase -
  OHA88_RS07250 (OHA88_07275) - 1506534..1507214 (-) 681 WP_328624734.1 response regulator transcription factor -
  OHA88_RS07255 (OHA88_07280) - 1507321..1508475 (+) 1155 WP_328624735.1 histidine kinase -
  OHA88_RS07260 (OHA88_07285) vraR 1508472..1509131 (+) 660 WP_328624736.1 response regulator transcription factor Regulator
  OHA88_RS07265 (OHA88_07290) - 1509165..1509497 (+) 333 WP_328624737.1 nuclear transport factor 2 family protein -
  OHA88_RS07270 (OHA88_07295) - 1509675..1510850 (-) 1176 WP_328624738.1 hypothetical protein -
  OHA88_RS07275 (OHA88_07300) - 1511051..1513918 (-) 2868 WP_328624739.1 hypothetical protein -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 23522.84 Da        Isoelectric Point: 5.3607

>NTDB_id=650815 OHA88_RS07260 WP_328624736.1 1508472..1509131(+) (vraR) [Streptomyces sp. NBC_00353]
MTIRVLLADDNEITRRGLTWIMDSSPDIEVCGEAVDGEEAVARAGELQPDVVLLDVRMPRLDGLESIGRLLNLPHPPRIL
MLTTFHEDESVRVALRAGAAGFLLKDTPPDDLLRAIRDVHGGHSALGPPVARRLVDGLADRASRADPEEGSRIASLSPRE
HEVLRLLARGLTNTDIASALGMTEGTVKGHVSSILAKLGADSRVKAARIAYRAGLDDQA

Nucleotide


Download         Length: 660 bp        

>NTDB_id=650815 OHA88_RS07260 WP_328624736.1 1508472..1509131(+) (vraR) [Streptomyces sp. NBC_00353]
ATGACCATCCGTGTCCTGCTCGCCGACGACAACGAGATCACGCGCCGCGGGCTGACCTGGATCATGGACTCCAGCCCCGA
CATCGAAGTGTGCGGCGAAGCCGTCGACGGCGAGGAGGCGGTGGCCCGGGCCGGGGAGCTCCAGCCGGATGTGGTCCTGC
TCGACGTCCGAATGCCGAGGCTCGACGGACTCGAGTCCATCGGACGCCTTCTGAACCTCCCGCACCCACCGCGGATCCTC
ATGCTCACAACATTCCACGAGGACGAGTCGGTACGGGTCGCGCTACGGGCCGGAGCGGCCGGTTTCCTGCTCAAGGACAC
GCCGCCCGACGACCTTCTGCGCGCCATCCGCGACGTGCACGGCGGTCATTCCGCGCTCGGCCCACCGGTGGCCCGCCGTC
TGGTGGACGGCCTGGCCGACCGCGCCTCGCGGGCCGACCCCGAAGAAGGGAGCAGAATCGCCTCGCTCAGCCCGCGTGAG
CACGAGGTGCTGCGGCTGCTCGCACGCGGGCTGACCAATACCGACATTGCCTCCGCGCTCGGTATGACCGAGGGCACGGT
CAAGGGTCACGTCAGCAGCATCCTCGCGAAGCTGGGTGCGGACAGCCGCGTCAAGGCCGCGCGGATCGCCTACCGTGCGG
GTCTCGACGACCAGGCATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-117)

Bacterial regulatory proteins, luxR family (GerE)

(155-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

39.352

98.63

0.388
  degU Bacillus subtilis subsp. subtilis str. 168

35.586

100

0.361