Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHA88_RS02635 Genome accession   NZ_CP107985
Coordinates   571011..571709 (+) Length   232 a.a.
NCBI ID   WP_328624031.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00353     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 566011..576709
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA88_RS02615 (OHA88_02625) - 566045..566938 (+) 894 WP_328624027.1 hypothetical protein -
  OHA88_RS02620 (OHA88_02630) - 567252..568241 (-) 990 WP_328624028.1 phosphotransferase -
  OHA88_RS02625 (OHA88_02635) - 568386..569324 (-) 939 WP_328624029.1 CPBP family intramembrane glutamic endopeptidase -
  OHA88_RS02630 (OHA88_02640) - 569812..571014 (+) 1203 WP_328624030.1 histidine kinase -
  OHA88_RS02635 (OHA88_02645) vraR 571011..571709 (+) 699 WP_328624031.1 response regulator transcription factor Regulator
  OHA88_RS02640 (OHA88_02650) - 572035..572682 (-) 648 WP_328629565.1 hypothetical protein -
  OHA88_RS02645 (OHA88_02655) - 573137..573281 (-) 145 Protein_528 IS5/IS1182 family transposase -
  OHA88_RS02650 (OHA88_02660) - 573375..573767 (-) 393 WP_328624032.1 hypothetical protein -
  OHA88_RS02655 (OHA88_02665) - 573784..574539 (-) 756 WP_328624033.1 transposase family protein -
  OHA88_RS02660 - 574671..575217 (+) 547 Protein_531 IS630 family transposase -
  OHA88_RS02665 (OHA88_02675) - 575335..575979 (-) 645 WP_328629566.1 LysE family translocator -
  OHA88_RS02670 (OHA88_02680) - 576183..576356 (+) 174 WP_328624034.1 hypothetical protein -

Sequence

Protein


Download         Length: 232 a.a.        Molecular weight: 25061.10 Da        Isoelectric Point: 6.4882

>NTDB_id=650810 OHA88_RS02635 WP_328624031.1 571011..571709(+) (vraR) [Streptomyces sp. NBC_00353]
MSVPPAAIRVLVCEDQALVRAGFVTILSAQPDMEVVGEAEDGRAAIRSAQELKPDVVVMDIRMPLLDGIEATRRLAGPDS
PNPAKILIVTTFNVDEYVYEALRAGASGFLLKDPPPPELINAVRTVARGESLLAPAVTRTLIGRFAERLRPTTVPTSPER
DRLKVLTPREYEVLLLISKGLSNAEIAAQLVISAETVKTYVSRILTKLDLRDRVQAVVLAYRTGVAGGGDRA

Nucleotide


Download         Length: 699 bp        

>NTDB_id=650810 OHA88_RS02635 WP_328624031.1 571011..571709(+) (vraR) [Streptomyces sp. NBC_00353]
ATGAGTGTTCCGCCCGCTGCGATCAGGGTGCTGGTCTGCGAGGATCAAGCCCTCGTGCGCGCCGGCTTCGTCACGATCCT
CTCCGCCCAGCCCGACATGGAAGTCGTGGGCGAGGCCGAGGACGGCCGAGCGGCGATCCGGAGCGCGCAGGAGCTGAAGC
CCGACGTCGTCGTCATGGACATCCGCATGCCCCTGCTCGACGGAATCGAGGCCACCCGCCGCCTGGCAGGACCCGACTCC
CCCAACCCCGCGAAGATCCTCATCGTCACGACCTTCAACGTCGACGAATACGTGTACGAGGCCCTCCGCGCCGGCGCCAG
CGGCTTCCTACTCAAGGACCCCCCACCGCCCGAACTGATCAACGCGGTACGCACCGTCGCCCGCGGCGAGTCCCTCCTCG
CCCCCGCCGTCACCCGCACCCTGATCGGCCGCTTCGCCGAACGCCTGCGCCCCACCACCGTCCCCACGTCCCCCGAGCGC
GACCGCCTCAAGGTGCTCACCCCCCGCGAGTACGAGGTCCTCCTTCTCATCAGCAAGGGCCTGTCGAACGCCGAAATAGC
CGCCCAGTTGGTCATCAGCGCAGAGACCGTGAAGACCTACGTCTCCCGCATCCTCACCAAACTGGACCTCCGCGACCGCG
TCCAGGCGGTGGTCCTGGCGTACCGGACGGGCGTGGCGGGAGGCGGCGACCGAGCCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(10-124)

Bacterial regulatory proteins, luxR family (GerE)

(165-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

42.202

93.966

0.397
  degU Bacillus subtilis subsp. subtilis str. 168

40.708

97.414

0.397