Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHT74_RS35615 Genome accession   NZ_CP107983
Coordinates   7765374..7766033 (-) Length   219 a.a.
NCBI ID   WP_266673325.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00354     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 7760374..7771033
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT74_RS35580 (OHT74_35615) - 7760928..7761527 (-) 600 WP_266670497.1 acyltransferase -
  OHT74_RS35585 (OHT74_35620) - 7761524..7761844 (-) 321 Protein_7020 hypothetical protein -
  OHT74_RS35590 (OHT74_35625) - 7761859..7762083 (+) 225 WP_328623503.1 hypothetical protein -
  OHT74_RS35595 (OHT74_35630) - 7762258..7762680 (-) 423 WP_328622503.1 hypothetical protein -
  OHT74_RS35600 (OHT74_35635) - 7762819..7763496 (+) 678 WP_328622504.1 class I SAM-dependent methyltransferase -
  OHT74_RS35605 (OHT74_35640) - 7763528..7763970 (+) 443 Protein_7024 kinase -
  OHT74_RS35610 (OHT74_35645) - 7763989..7765212 (-) 1224 WP_328622505.1 alpha/beta hydrolase -
  OHT74_RS35615 (OHT74_35650) vraR 7765374..7766033 (-) 660 WP_266673325.1 response regulator transcription factor Regulator
  OHT74_RS35620 (OHT74_35655) - 7766045..7767310 (-) 1266 WP_328622506.1 sensor histidine kinase -
  OHT74_RS35625 (OHT74_35660) - 7767629..7769101 (+) 1473 WP_328622507.1 hypothetical protein -
  OHT74_RS35630 (OHT74_35665) - 7769183..7770448 (+) 1266 WP_328622508.1 MoxR family ATPase -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 23226.62 Da        Isoelectric Point: 4.8029

>NTDB_id=650803 OHT74_RS35615 WP_266673325.1 7765374..7766033(-) (vraR) [Streptomyces sp. NBC_00354]
MIADDQAMVREAFSILLGTQSDIEVVATAQDGIDAVAKADALLPDVIVMDIRMPGLDGIEATRRITSRPGSDTKILVLTT
FNLDEYVYAALRAGAGGFLLKDASGLELAEAVRVVARGEALLSPDLTKRLIAEFARTSGTPKAPTGVRIGTLTDRENEVL
TQIAQGLSNAEIAGRLAVAEETVKTHVGRILHKLQLRDRTQAAVLAWENGLVAPGTSSL

Nucleotide


Download         Length: 660 bp        

>NTDB_id=650803 OHT74_RS35615 WP_266673325.1 7765374..7766033(-) (vraR) [Streptomyces sp. NBC_00354]
ATGATCGCCGACGACCAGGCCATGGTCCGCGAGGCGTTCTCCATCCTGCTCGGCACCCAAAGCGACATCGAGGTCGTCGC
GACGGCCCAGGACGGCATCGACGCCGTGGCCAAGGCCGACGCCCTGCTGCCCGACGTCATCGTGATGGACATCCGCATGC
CCGGCCTCGACGGCATCGAGGCGACCCGCCGTATCACCTCCCGCCCGGGATCGGACACGAAGATCCTGGTCCTGACCACC
TTCAACCTCGACGAGTACGTGTACGCGGCGCTGCGCGCCGGGGCCGGCGGATTCCTCCTCAAGGACGCCTCCGGGCTGGA
GCTCGCCGAGGCCGTCAGGGTGGTGGCGCGCGGCGAGGCACTGCTGTCTCCCGACCTCACGAAGCGGCTCATCGCGGAGT
TCGCCCGCACGAGCGGCACCCCGAAGGCTCCGACCGGAGTTCGGATCGGCACGCTGACGGACCGCGAGAACGAGGTGCTC
ACGCAGATCGCCCAGGGGCTGTCCAACGCAGAGATCGCGGGAAGGCTCGCCGTTGCCGAGGAGACTGTCAAGACCCACGT
GGGCCGCATCCTGCACAAGCTGCAGCTGCGCGACCGTACTCAAGCCGCCGTCCTCGCGTGGGAGAACGGCCTGGTCGCTC
CCGGCACCAGCAGCCTGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(151-206)

Response regulator receiver domain (Response_reg)

(1-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

41.981

96.804

0.406
  degU Bacillus subtilis subsp. subtilis str. 168

40.271

100

0.406