Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHT74_RS34590 Genome accession   NZ_CP107983
Coordinates   7542903..7543091 (+) Length   62 a.a.
NCBI ID   WP_328623455.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00354     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 7537903..7548091
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT74_RS34570 (OHT74_34605) - 7540490..7541374 (-) 885 WP_328623454.1 glycoside hydrolase family 19 protein -
  OHT74_RS34575 (OHT74_34610) - 7541578..7541988 (-) 411 WP_328622379.1 rodlin -
  OHT74_RS34580 (OHT74_34615) - 7542188..7542379 (-) 192 WP_328622380.1 DUF5302 domain-containing protein -
  OHT74_RS34585 (OHT74_34620) - 7542418..7542777 (-) 360 WP_328622381.1 hypothetical protein -
  OHT74_RS34590 (OHT74_34625) vraR 7542903..7543091 (+) 189 WP_328623455.1 response regulator transcription factor Regulator
  OHT74_RS34595 (OHT74_34630) - 7543204..7544139 (-) 936 WP_267001549.1 2-dehydropantoate 2-reductase -
  OHT74_RS34600 (OHT74_34635) - 7544136..7544678 (-) 543 WP_328622382.1 helix-turn-helix domain-containing protein -
  OHT74_RS34605 (OHT74_34640) - 7544720..7545520 (-) 801 WP_328622383.1 caspase family protein -

Sequence

Protein


Download         Length: 62 a.a.        Molecular weight: 6767.79 Da        Isoelectric Point: 11.5973

>NTDB_id=650799 OHT74_RS34590 WP_328623455.1 7542903..7543091(+) (vraR) [Streptomyces sp. NBC_00354]
MLTPRETEVLRLISAGATNTEIASRLHLSEGTVRNHISRVLSRLGLRDRAQAALCARDSGLI

Nucleotide


Download         Length: 189 bp        

>NTDB_id=650799 OHT74_RS34590 WP_328623455.1 7542903..7543091(+) (vraR) [Streptomyces sp. NBC_00354]
CTGCTCACGCCGCGGGAGACGGAAGTGCTCCGCCTCATCTCGGCCGGGGCCACGAACACGGAGATCGCCTCCCGCCTCCA
TCTCAGCGAGGGCACCGTCAGGAACCACATCTCCCGCGTCCTGAGCCGGCTGGGCCTGCGCGACCGCGCCCAGGCCGCCC
TCTGTGCCAGGGACAGCGGCCTCATCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(2-56)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

48.387

100

0.484
  degU Bacillus subtilis subsp. subtilis str. 168

40.323

100

0.403