Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHT74_RS29240 Genome accession   NZ_CP107983
Coordinates   6372756..6373397 (+) Length   213 a.a.
NCBI ID   WP_267000110.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00354     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6367756..6378397
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT74_RS29225 (OHT74_29260) - 6367769..6370330 (+) 2562 WP_328621838.1 FHA domain-containing protein -
  OHT74_RS29230 (OHT74_29265) - 6370432..6371145 (-) 714 WP_266668340.1 transglycosylase SLT domain-containing protein -
  OHT74_RS29235 (OHT74_29270) - 6371618..6372763 (+) 1146 WP_266668342.1 GAF domain-containing sensor histidine kinase -
  OHT74_RS29240 (OHT74_29275) vraR 6372756..6373397 (+) 642 WP_267000110.1 response regulator transcription factor Regulator
  OHT74_RS29245 (OHT74_29280) - 6373546..6373791 (+) 246 WP_266673158.1 chaplin -
  OHT74_RS29250 (OHT74_29285) - 6374013..6374798 (-) 786 WP_266668346.1 hypothetical protein -
  OHT74_RS29255 (OHT74_29290) - 6374944..6375744 (+) 801 WP_030300602.1 ABC transporter ATP-binding protein -
  OHT74_RS29260 (OHT74_29295) - 6375829..6376257 (+) 429 WP_266668348.1 NfeD family protein -
  OHT74_RS29265 (OHT74_29300) - 6376351..6377343 (+) 993 WP_266668354.1 SPFH domain-containing protein -
  OHT74_RS29270 (OHT74_29305) - 6377450..6378220 (+) 771 WP_328621839.1 sulfite exporter TauE/SafE family protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23208.45 Da        Isoelectric Point: 5.0156

>NTDB_id=650790 OHT74_RS29240 WP_267000110.1 6372756..6373397(+) (vraR) [Streptomyces sp. NBC_00354]
MADTPIRVLLVDDHQVVRRGLRTFLEVQDDIEVVGEAADGEEGVARAEELRPDVILMDIKMPGTDGIEALRRLRALANPA
RVLIVTSFTEQRTVVPALRGGAAGYVYKDIDPDALAGAIRSVHAGHVLLQPEVAEALLSQEEQPSSSRGGSLTEREREVL
SLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLSDRTQAALWAVRHGLAE

Nucleotide


Download         Length: 642 bp        

>NTDB_id=650790 OHT74_RS29240 WP_267000110.1 6372756..6373397(+) (vraR) [Streptomyces sp. NBC_00354]
GTGGCTGACACGCCCATCCGCGTTCTGCTCGTGGACGACCACCAGGTGGTCCGCCGCGGCCTGCGCACGTTCCTGGAGGT
CCAGGACGACATCGAGGTGGTCGGGGAGGCCGCCGACGGCGAGGAGGGCGTGGCCCGCGCCGAGGAGCTGCGGCCCGACG
TGATCCTCATGGACATCAAGATGCCGGGCACCGACGGCATCGAGGCGCTGCGCCGGCTGCGCGCGCTGGCGAACCCGGCG
CGGGTGCTGATCGTCACCAGCTTCACCGAGCAGCGGACGGTCGTGCCGGCCCTGCGGGGCGGCGCCGCGGGATACGTCTA
CAAGGACATCGACCCCGACGCCCTGGCCGGAGCGATCCGCTCCGTCCACGCCGGGCACGTGCTGCTCCAGCCGGAGGTGG
CGGAGGCCCTGCTCTCCCAGGAAGAACAGCCCTCGTCGAGCCGGGGCGGCTCCCTGACCGAGCGGGAGCGGGAGGTCCTG
TCCCTCATCGCGGACGGCCGCTCGAACCGGGAGATCGCCCGCGCGCTGGTGCTGTCGGAGAAGACGGTCAAGACGCACGT
CTCGAACATCCTCATGAAGCTGGACCTGTCCGACCGGACGCAGGCCGCGTTGTGGGCGGTCAGGCACGGACTGGCCGAAT
GA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(151-206)

Response regulator receiver domain (Response_reg)

(8-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

45.192

97.653

0.441
  degU Bacillus subtilis subsp. subtilis str. 168

38.053

100

0.404