Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OHT74_RS18110 Genome accession   NZ_CP107983
Coordinates   4020469..4021068 (-) Length   199 a.a.
NCBI ID   WP_030152816.1    Uniprot ID   A0A5J6J6A5
Organism   Streptomyces sp. NBC_00354     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4015469..4026068
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT74_RS18090 (OHT74_18115) - 4016386..4017075 (-) 690 WP_266672843.1 SigE family RNA polymerase sigma factor -
  OHT74_RS18095 (OHT74_18120) - 4017322..4018398 (-) 1077 WP_266665427.1 aspartate-semialdehyde dehydrogenase -
  OHT74_RS18100 (OHT74_18125) - 4018395..4019669 (-) 1275 WP_266665430.1 aspartate kinase -
  OHT74_RS18105 (OHT74_18130) - 4019820..4020476 (-) 657 WP_266665432.1 DUF5063 domain-containing protein -
  OHT74_RS18110 (OHT74_18135) recR 4020469..4021068 (-) 600 WP_030152816.1 recombination mediator RecR Machinery gene
  OHT74_RS18115 (OHT74_18140) - 4021108..4021452 (-) 345 WP_266665434.1 YbaB/EbfC family nucleoid-associated protein -
  OHT74_RS18120 (OHT74_18145) - 4021708..4022472 (+) 765 WP_266665436.1 SLATT domain-containing protein -
  OHT74_RS18125 (OHT74_18150) - 4022689..4023339 (-) 651 WP_133897356.1 hypothetical protein -
  OHT74_RS18130 (OHT74_18155) - 4023493..4026021 (-) 2529 WP_328620763.1 glycosyltransferase -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21928.25 Da        Isoelectric Point: 5.0142

>NTDB_id=650762 OHT74_RS18110 WP_030152816.1 4020469..4021068(-) (recR) [Streptomyces sp. NBC_00354]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAHALLEVKDKVRFCAVCGNVAQEERCNICRDPRRDTTV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGEVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=650762 OHT74_RS18110 WP_030152816.1 4020469..4021068(-) (recR) [Streptomyces sp. NBC_00354]
GTGTACGAAGGCGTGGTCCAGGACCTGATCGACGAACTGGGCAGGCTGCCCGGCGTCGGGCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTGCAGGCGGAGCCCACCGACGTCCGGCGCCTCGCGCACGCGCTGCTCGAGGTCAAGGACAAGGTCC
GGTTCTGCGCCGTGTGCGGGAACGTGGCGCAGGAGGAGCGGTGCAACATCTGCCGCGACCCGCGCCGCGACACCACGGTC
ATCTGCGTGGTCGAGGAACCGAAGGACGTCGTCGCGATCGAGCGGACCCGCGAGTTCCGGGGCAGGTACCACGTCCTCGG
CGGCGCGATCAGCCCGATCGAGGGCGTCGGCCCGGACGATCTGCGCATCCGCGAGCTGCTGGCGCGCCTCGCGGACGGCG
AGGTGACCGAGCTGATCCTCGCCACCGACCCGAACCTGGAGGGCGAGGCGACCGCCACGTACCTCGCCCGCATGATCAAG
CCCATGGGCCTGAAGGTCACCCGCCTGGCCAGCGGGCTCCCCGTCGGGGGAGATCTGGAGTACGCGGACGAGGTCACGCT
CGGGCGGGCCTTTGAAGGAAGGCGACTTCTCGATGTCTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(38-77)

Toprim domain (Toprim_4)

(80-170)

Helix-hairpin-helix motif (HHH)

(2-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5J6J6A5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.612

98.492

0.548
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.639

97.487

0.533
  recR Streptococcus pneumoniae R6

48.454

97.487

0.472