Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OHT74_RS17005 Genome accession   NZ_CP107983
Coordinates   3795509..3796912 (+) Length   467 a.a.
NCBI ID   WP_328620641.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00354     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3790509..3801912
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT74_RS16985 (OHT74_17010) - 3790529..3791365 (-) 837 WP_266665117.1 sugar phosphate isomerase/epimerase -
  OHT74_RS16990 (OHT74_17015) - 3792166..3793095 (-) 930 WP_266665119.1 Ppx/GppA phosphatase family protein -
  OHT74_RS16995 (OHT74_17020) - 3793159..3794025 (+) 867 WP_266996351.1 hypothetical protein -
  OHT74_RS17000 (OHT74_17025) - 3794189..3795289 (-) 1101 Protein_3372 sigma-70 family RNA polymerase sigma factor -
  OHT74_RS17005 (OHT74_17030) radA/sms 3795509..3796912 (+) 1404 WP_328620641.1 DNA repair protein RadA Machinery gene
  OHT74_RS17010 (OHT74_17035) disA 3797167..3798291 (+) 1125 WP_266665127.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OHT74_RS17015 (OHT74_17040) - 3798400..3799137 (-) 738 WP_328620642.1 hypothetical protein -
  OHT74_RS17020 (OHT74_17045) - 3799361..3799783 (+) 423 WP_328620643.1 phosphatase PAP2 family protein -
  OHT74_RS17025 (OHT74_17050) - 3799805..3800758 (+) 954 WP_266665131.1 A/G-specific adenine glycosylase -
  OHT74_RS17030 (OHT74_17055) - 3800942..3801514 (+) 573 WP_030158464.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 467 a.a.        Molecular weight: 48694.84 Da        Isoelectric Point: 8.2591

>NTDB_id=650757 OHT74_RS17005 WP_328620641.1 3795509..3796912(+) (radA/sms) [Streptomyces sp. NBC_00354]
MAARTSRSSAKDRPSYRCSECGYTTAKWLGRCPECQAWGTVEEMGGAPAVRTTAAGRVSAPALPIAQVDGRTATARSTGV
DELDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASEAHRTLYVTGEESASQVRLRADRIKALSDHLFLAAETDLS
AVLGHLDAVQPSLLVLDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMATLLVGHVTKDGAIAGPRLLEHLVDVV
LSFEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRAEAVPGTCLTVTLEGKRPLVAEVQALTVD
SQIPSPRRTTSGLETSRVSMMLAVLEQRGRITALGKRDIYSATVGGVKLTEPAADLAIALALASAASDVPLPKNLVAIGE
VGLAGEVRRVTGVQRRLAEAHRLGFTHALVPGDPGKVPAGMKVTEVADMGDALRVLPRGRSRAAAKE

Nucleotide


Download         Length: 1404 bp        

>NTDB_id=650757 OHT74_RS17005 WP_328620641.1 3795509..3796912(+) (radA/sms) [Streptomyces sp. NBC_00354]
ATGGCTGCCCGTACATCTCGTTCATCCGCCAAGGACCGGCCGTCCTACCGCTGCTCCGAGTGCGGGTACACGACCGCGAA
ATGGCTCGGGCGGTGCCCCGAATGCCAGGCGTGGGGCACCGTGGAGGAAATGGGCGGCGCGCCCGCCGTACGGACCACCG
CCGCCGGCCGGGTCTCGGCGCCCGCGCTCCCGATCGCGCAGGTCGACGGCCGGACGGCGACCGCCCGCAGCACCGGTGTG
GACGAGCTGGACCGGGTCCTCGGCGGCGGGCTCGTGCCCGGCGCCGTCGTCCTGCTGGCCGGCGAGCCCGGCGTCGGGAA
GTCGACGCTGCTGCTGGACGTGGCGGCGAAGGCGGCCAGCGAGGCGCACCGCACGCTCTACGTGACGGGCGAGGAGTCGG
CGAGCCAGGTGCGGCTGCGGGCCGACCGGATCAAAGCGCTGAGCGACCACCTCTTCCTCGCCGCCGAGACCGACCTGTCC
GCCGTGCTGGGCCACCTCGACGCCGTGCAGCCCTCGCTGCTGGTCCTGGACTCCGTACAGACCGTGGCCTCGCCCGAGAT
CGACGGCGCACCCGGCGGCATGGCCCAGGTCCGCGAGGTGGCCGGGGCGCTGATCCGCGCCTCCAAGGAGCGCGGCATGG
CCACCCTGCTGGTCGGGCACGTCACCAAGGACGGGGCGATCGCCGGCCCCCGGCTGCTGGAGCACCTGGTGGACGTGGTC
CTCAGCTTCGAGGGCGACCGGCACGCACGCCTGCGCCTCGTACGCGGCGTCAAGAACCGGTACGGGGCCACCGACGAGGT
CGGCTGCTTCGAGCTCCACGACGAGGGGATCACCGGGCTCGCCGACCCGAGCGGACTGTTCCTGACCCGGCGCGCGGAGG
CCGTCCCCGGGACCTGCCTGACGGTGACGCTGGAGGGCAAGCGCCCGCTGGTCGCCGAGGTGCAGGCGCTGACCGTGGAC
TCGCAGATCCCCTCGCCGCGGCGGACCACCTCGGGCCTGGAGACCTCCCGCGTCTCGATGATGCTGGCGGTGCTGGAGCA
GCGCGGCCGGATCACCGCACTCGGCAAGCGCGACATCTACAGCGCCACCGTGGGCGGGGTGAAGCTGACGGAGCCGGCCG
CCGACCTGGCGATCGCGCTCGCGCTGGCCTCGGCGGCGAGCGACGTGCCGCTGCCGAAGAACCTCGTCGCGATCGGGGAG
GTCGGCCTCGCGGGCGAGGTGCGGCGCGTGACCGGGGTGCAGCGGCGGCTCGCGGAGGCGCACCGGCTCGGCTTCACGCA
CGCCCTGGTGCCCGGCGACCCCGGGAAGGTGCCGGCCGGCATGAAGGTCACCGAGGTCGCGGACATGGGCGACGCCCTGC
GCGTCCTGCCGCGCGGGCGGTCGCGGGCGGCGGCCAAGGAGTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(373-431)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(16-43)

AAA domain (AAA_25)

(85-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

44.273

97.216

0.43
  radA Streptococcus pneumoniae Rx1

42.572

96.574

0.411
  radA Streptococcus pneumoniae D39

42.572

96.574

0.411
  radA Streptococcus pneumoniae R6

42.572

96.574

0.411
  radA Streptococcus pneumoniae TIGR4

42.572

96.574

0.411
  radA Streptococcus mitis SK321

44.028

91.435

0.403
  radA Streptococcus mitis NCTC 12261

44.028

91.435

0.403