Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   L2Z48_RS16460 Genome accession   NZ_CP091371
Coordinates   3398486..3399304 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain AB36-VUB     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3393486..3404304
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Z48_RS16445 (L2Z48_16440) pilE 3393703..3394128 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  L2Z48_RS16450 (L2Z48_16445) pilY2 3394125..3394607 (-) 483 WP_001046420.1 type IV pilin protein Machinery gene
  L2Z48_RS16455 (L2Z48_16450) pilY1 3394620..3398474 (-) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene
  L2Z48_RS16460 (L2Z48_16455) pilX 3398486..3399304 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  L2Z48_RS16465 (L2Z48_16460) pilW 3399301..3400302 (-) 1002 WP_000079200.1 PilW family protein Machinery gene
  L2Z48_RS16470 (L2Z48_16465) pilV 3400303..3400863 (-) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  L2Z48_RS16475 (L2Z48_16470) fimU 3400857..3401330 (-) 474 WP_001214061.1 GspH/FimT family pseudopilin Machinery gene
  L2Z48_RS16480 (L2Z48_16475) ispH 3401500..3402450 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  L2Z48_RS16485 (L2Z48_16480) gmk 3402573..3403202 (+) 630 WP_000015937.1 guanylate kinase -
  L2Z48_RS16490 (L2Z48_16485) rpoZ 3403275..3403553 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  L2Z48_RS16495 (L2Z48_16490) - 3403592..3403721 (+) 130 Protein_3219 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=650743 L2Z48_RS16460 WP_000149374.1 3398486..3399304(-) (pilX) [Acinetobacter baumannii strain AB36-VUB]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=650743 L2Z48_RS16460 WP_000149374.1 3398486..3399304(-) (pilX) [Acinetobacter baumannii strain AB36-VUB]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAATGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993