Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   OHT74_RS11525 Genome accession   NZ_CP107983
Coordinates   2651424..2652641 (-) Length   405 a.a.
NCBI ID   WP_266636376.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00354     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2646424..2657641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT74_RS11505 (OHT74_11530) - 2646669..2647007 (-) 339 WP_053691083.1 P-II family nitrogen regulator -
  OHT74_RS11510 (OHT74_11535) - 2647004..2648350 (-) 1347 WP_266663322.1 ammonium transporter -
  OHT74_RS11515 (OHT74_11540) - 2648743..2650176 (-) 1434 WP_106975115.1 hypothetical protein -
  OHT74_RS11520 (OHT74_11545) - 2650656..2651324 (+) 669 WP_266663324.1 bifunctional DNA primase/polymerase -
  OHT74_RS11525 (OHT74_11550) pilA 2651424..2652641 (-) 1218 WP_266636376.1 signal recognition particle-docking protein FtsY Machinery gene
  OHT74_RS11530 (OHT74_11555) - 2652785..2654269 (+) 1485 WP_328620203.1 cytosine permease -
  OHT74_RS11535 (OHT74_11560) - 2654333..2655319 (+) 987 WP_328620204.1 LLM class flavin-dependent oxidoreductase -
  OHT74_RS11540 (OHT74_11565) - 2655369..2656805 (-) 1437 WP_266663330.1 sugar porter family MFS transporter -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 42393.55 Da        Isoelectric Point: 4.4015

>NTDB_id=650744 OHT74_RS11525 WP_266636376.1 2651424..2652641(-) (pilA) [Streptomyces sp. NBC_00354]
MDILILAVVIALVAVGVISGLVVGSRKKKQLPPSAPPSTPTITAPPAEPQVGEDAVETAEEPRRTIEEVGLPEAEAAAPE
APAVVEPEAPAAPEIEVPEPTAGRLIRLRARLARSQNSLGKGLLTLLSREHLDEDTWEEIEETLLIADVGVVPTQELVDR
LRERVKVLGTRTPADLRALLKEELLTLVGTDFDRAVKTESGVDTPGVVMVVGVNGTGKTTTTGKLARVLVADGRSVVLGA
ADTFRAAAADQLQTWGERVGARTVRGPEGGDPASIAYDAVKEGIAEGADVVLIDTAGRLHTKTGLMDELGKVKRVVEKHG
PLDEILLVLDATTGQNGLTQARVFAEVVDITGIVLTKLDGTAKGGIVVAVQRELGVPVKLIGLGEGPDDLAPFEPEAFVD
ALIGD

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=650744 OHT74_RS11525 WP_266636376.1 2651424..2652641(-) (pilA) [Streptomyces sp. NBC_00354]
ATGGACATCCTCATCCTTGCTGTAGTCATCGCCCTGGTCGCGGTCGGCGTGATCAGCGGGCTCGTGGTCGGCAGCCGCAA
GAAGAAGCAGCTGCCGCCCTCGGCGCCGCCCAGCACACCGACCATCACTGCCCCGCCCGCCGAACCGCAGGTGGGGGAGG
ACGCCGTAGAGACGGCGGAAGAGCCCCGCCGCACCATCGAGGAGGTCGGCCTCCCCGAAGCGGAGGCTGCGGCTCCCGAG
GCGCCCGCCGTCGTCGAACCCGAGGCTCCGGCCGCCCCCGAGATCGAGGTGCCCGAGCCCACCGCCGGCCGCCTGATCCG
GCTGCGCGCCCGGCTCGCCCGGTCACAGAACTCGCTCGGCAAGGGGCTGCTCACGCTGCTCTCGCGCGAGCACCTCGACG
AGGACACCTGGGAGGAGATCGAGGAGACCCTCCTGATCGCCGACGTCGGTGTCGTGCCGACGCAGGAGCTCGTGGACCGG
CTCCGCGAGCGGGTCAAGGTGCTCGGCACCCGCACCCCCGCGGACCTGCGCGCCCTGCTCAAGGAGGAGCTGCTGACCCT
GGTCGGCACCGACTTCGACCGCGCGGTGAAGACCGAGAGCGGCGTGGACACCCCGGGCGTCGTGATGGTCGTGGGGGTCA
ACGGCACCGGCAAGACCACCACCACCGGCAAGCTGGCCCGCGTGCTCGTCGCCGACGGCCGCTCCGTGGTGCTCGGCGCC
GCCGACACCTTCCGCGCCGCCGCCGCCGACCAGCTCCAGACCTGGGGCGAGCGGGTCGGCGCGCGCACCGTGCGCGGCCC
CGAGGGCGGCGACCCGGCCTCGATCGCCTACGACGCGGTCAAGGAGGGCATCGCCGAAGGCGCCGACGTGGTGCTCATCG
ACACCGCCGGCCGCCTGCACACCAAGACCGGCCTCATGGACGAGCTCGGCAAGGTCAAGCGCGTCGTGGAGAAGCACGGC
CCGCTGGACGAGATCCTGCTGGTCCTGGACGCCACCACCGGGCAGAACGGCCTGACCCAGGCCCGCGTCTTCGCCGAGGT
CGTGGACATCACCGGCATCGTGCTGACCAAGCTCGACGGCACCGCCAAGGGCGGCATCGTCGTCGCCGTGCAGCGCGAGC
TCGGCGTCCCGGTCAAGCTCATCGGCCTCGGCGAGGGCCCGGACGACCTGGCGCCCTTCGAGCCGGAGGCGTTCGTGGAC
GCCCTGATCGGCGACTGA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(119-184)

SRP54-type protein, GTPase domain (SRP54)

(206-403)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

39.709

100

0.405