Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHB28_RS37685 Genome accession   NZ_CP107981
Coordinates   8280715..8281365 (-) Length   216 a.a.
NCBI ID   WP_328634155.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00356     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 8275715..8286365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB28_RS37665 (OHB28_37675) - 8276520..8277350 (-) 831 WP_328634152.1 alpha/beta fold hydrolase -
  OHB28_RS37670 (OHB28_37680) sigJ 8277509..8278390 (+) 882 WP_328634153.1 RNA polymerase sigma factor SigJ -
  OHB28_RS37675 (OHB28_37685) - 8278595..8279356 (+) 762 WP_327669367.1 GntR family transcriptional regulator -
  OHB28_RS37680 (OHB28_37690) - 8279406..8280563 (-) 1158 WP_328634154.1 ROK family protein -
  OHB28_RS37685 (OHB28_37695) vraR 8280715..8281365 (-) 651 WP_328634155.1 response regulator transcription factor Regulator
  OHB28_RS37690 (OHB28_37700) - 8281380..8282597 (-) 1218 WP_328634156.1 histidine kinase -
  OHB28_RS37695 (OHB28_37705) - 8282706..8283629 (+) 924 WP_327669365.1 ATP-binding cassette domain-containing protein -
  OHB28_RS37700 (OHB28_37710) - 8283642..8284385 (+) 744 WP_327666321.1 ABC transporter permease -
  OHB28_RS37705 (OHB28_37715) - 8284471..8285268 (+) 798 WP_327664485.1 SAM-dependent methyltransferase -
  OHB28_RS37710 (OHB28_37720) mug 8285278..8285826 (-) 549 WP_328635605.1 G/U mismatch-specific DNA glycosylase -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 22981.62 Da        Isoelectric Point: 5.1552

>NTDB_id=650711 OHB28_RS37685 WP_328634155.1 8280715..8281365(-) (vraR) [Streptomyces sp. NBC_00356]
MPLTVLLVDDEPLVRAGLRAVLEAQPDITVVGEAADGAAVVPLVRELRPNVVAMDVRMPLLDGIEATRAVLRGAERPPKI
LVITTFENDEYVYGALRAGADGFLLKRARPEEIVHAVRLVAAGESLLFPAAVRKLAAEYGSSVARAALERAALTEREEQV
LRLMARGLSNAEIAADLVVGTETVKSHVSAVLTKLGARDRTQAVIAAYESGFVAPS

Nucleotide


Download         Length: 651 bp        

>NTDB_id=650711 OHB28_RS37685 WP_328634155.1 8280715..8281365(-) (vraR) [Streptomyces sp. NBC_00356]
GTGCCGCTCACCGTGCTTCTTGTCGACGACGAACCGCTCGTCCGCGCGGGCCTGCGCGCGGTGCTCGAAGCGCAGCCGGA
CATCACGGTGGTGGGTGAGGCCGCGGACGGCGCGGCGGTCGTGCCCCTGGTCCGCGAGCTGCGACCCAACGTGGTCGCCA
TGGACGTCCGGATGCCGCTGCTCGACGGGATCGAGGCCACGCGCGCGGTGCTGCGCGGCGCGGAGCGGCCGCCGAAGATC
CTCGTGATCACCACGTTCGAGAACGACGAGTACGTGTACGGGGCGTTGCGCGCGGGCGCCGACGGCTTCCTCCTGAAGCG
GGCACGCCCCGAGGAGATCGTGCACGCGGTGCGCCTCGTCGCGGCGGGCGAGTCGCTCCTGTTCCCTGCCGCGGTCCGCA
AGTTGGCGGCGGAGTACGGGAGTTCGGTGGCCCGTGCGGCCCTGGAGCGCGCGGCACTGACCGAACGCGAGGAGCAGGTG
CTGCGGCTCATGGCGCGCGGCCTGTCGAACGCGGAGATCGCCGCGGACCTGGTCGTCGGCACCGAGACGGTCAAGTCCCA
CGTGAGCGCGGTGCTGACGAAGCTGGGCGCGCGGGACCGGACGCAGGCCGTGATCGCGGCGTACGAGTCGGGGTTCGTGG
CGCCGAGCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-206)

Response regulator receiver domain (Response_reg)

(5-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

41.121

99.074

0.407
  degU Bacillus subtilis subsp. subtilis str. 168

34.513

100

0.361