Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHB28_RS34490 Genome accession   NZ_CP107981
Coordinates   7575015..7575650 (+) Length   211 a.a.
NCBI ID   WP_328633866.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00356     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 7570015..7580650
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB28_RS34465 (OHB28_34465) - 7570056..7570940 (+) 885 WP_328633862.1 sterol desaturase family protein -
  OHB28_RS34470 (OHB28_34470) - 7570955..7571614 (+) 660 WP_327666293.1 lysoplasmalogenase -
  OHB28_RS34475 (OHB28_34475) - 7571653..7572696 (+) 1044 WP_328633863.1 zinc-dependent alcohol dehydrogenase family protein -
  OHB28_RS34480 (OHB28_34480) - 7572714..7573490 (-) 777 WP_328633864.1 class I SAM-dependent methyltransferase -
  OHB28_RS34485 (OHB28_34485) - 7573726..7575018 (+) 1293 WP_328633865.1 sensor histidine kinase -
  OHB28_RS34490 (OHB28_34490) vraR 7575015..7575650 (+) 636 WP_328633866.1 response regulator transcription factor Regulator
  OHB28_RS34495 (OHB28_34495) - 7575754..7576764 (-) 1011 WP_328635591.1 CopD family protein -
  OHB28_RS34500 (OHB28_34500) - 7576943..7578361 (-) 1419 WP_328633867.1 CoA transferase -
  OHB28_RS34505 (OHB28_34505) - 7578473..7580029 (-) 1557 WP_328633868.1 S8 family serine peptidase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22073.45 Da        Isoelectric Point: 9.0821

>NTDB_id=650705 OHB28_RS34490 WP_328633866.1 7575015..7575650(+) (vraR) [Streptomyces sp. NBC_00356]
MSAAVRVLLCDDHAVVRAGLRALLSSTDGMEVVGEADSGERALAMAEALGPDVVLMDLQLGTGMDGVEATRRLTASGAEE
APRVLVLTMFDTDADIARAVAAGATGYLLKAERPDRLFVAIRDAAAGRTALSGAVADRVVSRLRAPGPALTEREREVLAR
LAQGLGNREIARALFLSEATVKTHLGRVYAKLGVRTRAGAVAAAARHRLLP

Nucleotide


Download         Length: 636 bp        

>NTDB_id=650705 OHB28_RS34490 WP_328633866.1 7575015..7575650(+) (vraR) [Streptomyces sp. NBC_00356]
GTGAGCGCCGCCGTACGGGTCCTGCTCTGCGACGACCACGCCGTCGTCCGCGCCGGGCTGCGCGCCCTGCTGTCCAGCAC
CGACGGCATGGAGGTGGTCGGCGAGGCGGACAGCGGTGAGCGGGCCCTGGCGATGGCCGAGGCGCTGGGCCCCGACGTGG
TCCTCATGGACCTGCAACTCGGCACCGGCATGGACGGCGTCGAGGCCACTCGCCGACTGACGGCGTCCGGCGCGGAGGAG
GCCCCGCGCGTGCTGGTGCTCACCATGTTCGACACCGACGCGGACATCGCCCGCGCCGTCGCCGCGGGCGCCACCGGCTA
CCTGCTCAAGGCCGAGCGCCCCGACCGGCTGTTCGTGGCGATCCGCGACGCCGCCGCAGGACGCACCGCCCTGTCGGGTG
CGGTCGCCGACCGGGTGGTGTCCCGGCTCCGCGCCCCCGGGCCCGCGCTGACCGAACGCGAACGTGAGGTGCTGGCCCGC
CTGGCCCAGGGCCTGGGAAACCGGGAGATCGCCCGTGCCCTGTTCCTCAGCGAGGCCACGGTCAAGACCCACCTGGGCCG
CGTCTACGCCAAGCTCGGGGTGCGCACCAGGGCGGGAGCCGTGGCGGCCGCGGCCCGCCACCGACTGCTGCCGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-203)

Response regulator receiver domain (Response_reg)

(7-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.571

99.526

0.384
  degU Bacillus subtilis subsp. subtilis str. 168

34.234

100

0.36