Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OHB28_RS25885 Genome accession   NZ_CP107981
Coordinates   5626816..5627415 (+) Length   199 a.a.
NCBI ID   WP_266711576.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00356     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5621816..5632415
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB28_RS25860 (OHB28_25870) - 5622210..5623565 (+) 1356 WP_328633049.1 aspartate aminotransferase family protein -
  OHB28_RS25865 (OHB28_25875) - 5623695..5624378 (+) 684 WP_266711584.1 GntR family transcriptional regulator -
  OHB28_RS25870 (OHB28_25880) - 5624504..5625154 (+) 651 WP_327662696.1 hypothetical protein -
  OHB28_RS25875 (OHB28_25885) - 5625291..5626052 (-) 762 WP_328633050.1 SLATT domain-containing protein -
  OHB28_RS25880 (OHB28_25890) - 5626400..5626744 (+) 345 WP_266711578.1 YbaB/EbfC family nucleoid-associated protein -
  OHB28_RS25885 (OHB28_25895) recR 5626816..5627415 (+) 600 WP_266711576.1 recombination mediator RecR Machinery gene
  OHB28_RS25890 (OHB28_25900) - 5627408..5628145 (+) 738 WP_328633051.1 DUF5063 domain-containing protein -
  OHB28_RS25895 (OHB28_25905) - 5628458..5629744 (+) 1287 WP_266711572.1 aspartate kinase -
  OHB28_RS25900 (OHB28_25910) - 5629744..5630814 (+) 1071 WP_266711570.1 aspartate-semialdehyde dehydrogenase -
  OHB28_RS25905 (OHB28_25915) - 5631226..5631804 (+) 579 WP_266718699.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21766.12 Da        Isoelectric Point: 4.9909

>NTDB_id=650683 OHB28_RS25885 WP_266711576.1 5626816..5627415(+) (recR) [Streptomyces sp. NBC_00356]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAQALMEVKAKVRFCATCGNVAQEELCNICRDPRRDGSV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGTVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=650683 OHB28_RS25885 WP_266711576.1 5626816..5627415(+) (recR) [Streptomyces sp. NBC_00356]
GTGTACGAAGGCGTGGTCCAGGACCTCATCGACGAGTTGGGCAGGCTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTGCAGGCCGAGCCCACCGACGTACGGCGGCTCGCGCAGGCCCTGATGGAGGTCAAGGCGAAGGTCC
GCTTCTGTGCGACGTGCGGCAACGTCGCGCAGGAGGAGCTGTGCAACATCTGCCGCGACCCGCGGCGGGACGGTTCCGTG
ATCTGTGTCGTGGAGGAGCCCAAGGACGTCGTCGCGATCGAGCGCACCCGTGAGTTCCGCGGGCGGTACCACGTGCTCGG
CGGCGCGATCAGCCCGATCGAGGGCGTCGGTCCCGACGATCTGCGGATAAGGGAGCTTCTCGCCCGCCTCGCGGACGGCA
CGGTCACCGAGCTCATCCTCGCCACCGACCCGAACCTCGAGGGCGAGGCCACAGCGACGTACCTCGCCCGCATGATCAAG
CCCATGGGCCTCAAGGTCACCCGCCTGGCCAGCGGCCTCCCCGTCGGGGGCGACCTGGAGTACGCGGACGAGGTGACCCT
CGGCCGCGCCTTCGAGGGGAGAAGACTCCTAGATGTCTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH)

(2-27)

Toprim domain (Toprim_4)

(79-170)

RecR protein (RecR_ZnF)

(38-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.612

98.492

0.548
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.124

97.487

0.528
  recR Streptococcus pneumoniae R6

46.907

97.487

0.457