Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHB28_RS19310 Genome accession   NZ_CP107981
Coordinates   4250132..4250743 (-) Length   203 a.a.
NCBI ID   WP_328632473.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00356     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4245132..4255743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB28_RS19290 (OHB28_19295) - 4246246..4247349 (-) 1104 WP_327661720.1 bifunctional succinyldiaminopimelate transaminase/glutamate-prephenate aminotransferase -
  OHB28_RS19295 (OHB28_19300) fdxA 4247489..4247809 (-) 321 WP_266713752.1 ferredoxin -
  OHB28_RS19300 (OHB28_19305) - 4247950..4248954 (+) 1005 WP_328632471.1 GNAT family N-acetyltransferase -
  OHB28_RS19305 (OHB28_19310) - 4249271..4250113 (+) 843 WP_328632472.1 transglutaminase-like domain-containing protein -
  OHB28_RS19310 (OHB28_19315) vraR 4250132..4250743 (-) 612 WP_328632473.1 response regulator transcription factor Regulator
  OHB28_RS19315 (OHB28_19320) - 4250740..4251813 (-) 1074 WP_328635479.1 sensor histidine kinase -
  OHB28_RS19320 (OHB28_19325) - 4251894..4252634 (-) 741 WP_328632474.1 ABC transporter permease -
  OHB28_RS19325 (OHB28_19330) - 4252631..4253539 (-) 909 WP_328632475.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 21163.44 Da        Isoelectric Point: 4.8090

>NTDB_id=650666 OHB28_RS19310 WP_328632473.1 4250132..4250743(-) (vraR) [Streptomyces sp. NBC_00356]
MSAIKVLLAEDQSMVREALAALLGLEADIEVVAQVARGDEVVAAARAHAVDVALLDIEMPGCTGIEAAAQLREVLPELKV
VVLTTFGRPGYLRSAMEAGAAAFLVKDAPAAQLAEAVRKVLAGERVIDPTLAAAALAEGANPLTEREREVLRAAADGATN
AELATALHLSQGTVRNYLSVAIQKLAVRNRAEAVAAAREKGWL

Nucleotide


Download         Length: 612 bp        

>NTDB_id=650666 OHB28_RS19310 WP_328632473.1 4250132..4250743(-) (vraR) [Streptomyces sp. NBC_00356]
ATGAGCGCGATCAAGGTGTTGTTGGCCGAGGACCAGTCGATGGTGCGCGAGGCGCTGGCCGCGCTGCTCGGCCTCGAGGC
GGACATCGAGGTCGTCGCGCAGGTGGCGCGCGGTGACGAGGTGGTGGCGGCCGCCCGCGCGCACGCGGTGGACGTGGCGC
TCCTCGACATCGAGATGCCGGGCTGCACGGGCATCGAGGCGGCGGCCCAACTCCGCGAGGTTCTACCCGAGTTGAAGGTC
GTCGTGCTCACCACGTTCGGCCGGCCCGGCTATCTGCGCAGCGCCATGGAGGCGGGCGCGGCCGCGTTCCTGGTCAAGGA
CGCCCCGGCCGCGCAGCTCGCCGAGGCCGTACGGAAGGTGCTCGCGGGCGAACGCGTCATCGACCCGACGCTCGCGGCGG
CGGCCCTCGCGGAGGGCGCGAATCCGCTCACCGAACGCGAACGCGAGGTGTTGCGCGCGGCGGCGGACGGCGCCACCAAC
GCGGAACTGGCGACCGCCCTCCACCTGTCCCAGGGCACGGTCCGCAACTACCTGTCGGTGGCGATCCAGAAGCTGGCGGT
GCGCAATCGGGCGGAGGCGGTGGCCGCCGCGCGGGAGAAGGGCTGGCTGTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(6-118)

Bacterial regulatory proteins, luxR family (GerE)

(142-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

35.749

100

0.365