Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   L2Z06_RS16380 Genome accession   NZ_CP091368
Coordinates   3408867..3409247 (+) Length   126 a.a.
NCBI ID   WP_000836911.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain AB167-VUB     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3403867..3414247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Z06_RS16350 (L2Z06_16350) kdsB 3404770..3405531 (+) 762 WP_000680697.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  L2Z06_RS16355 (L2Z06_16355) - 3405543..3406523 (+) 981 WP_001075411.1 DNA polymerase III subunit delta' -
  L2Z06_RS16360 (L2Z06_16360) - 3406535..3406876 (+) 342 WP_001183024.1 PilZ domain-containing protein -
  L2Z06_RS16365 (L2Z06_16365) - 3406894..3407667 (+) 774 WP_000497298.1 TatD family hydrolase -
  L2Z06_RS16370 (L2Z06_16370) - 3407705..3408313 (+) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  L2Z06_RS16375 (L2Z06_16375) - 3408323..3408877 (+) 555 WP_000841373.1 type II secretion system protein -
  L2Z06_RS16380 (L2Z06_16380) xcpV 3408867..3409247 (+) 381 WP_000836911.1 type II secretion system minor pseudopilin GspI Machinery gene
  L2Z06_RS16385 (L2Z06_16385) xcpW 3409247..3409948 (+) 702 WP_000594589.1 type II secretion system minor pseudopilin GspJ Machinery gene
  L2Z06_RS16390 (L2Z06_16390) gspK 3409948..3410907 (+) 960 WP_000301476.1 type II secretion system minor pseudopilin GspK -
  L2Z06_RS16395 (L2Z06_16395) - 3411138..3411734 (+) 597 WP_000908452.1 6-carboxytetrahydropterin synthase -
  L2Z06_RS16400 (L2Z06_16400) ung 3411785..3412498 (+) 714 WP_001177528.1 uracil-DNA glycosylase -
  L2Z06_RS16405 (L2Z06_16405) - 3412495..3413619 (+) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  L2Z06_RS16410 (L2Z06_16410) tadA 3413626..3414129 (+) 504 WP_000033178.1 tRNA adenosine(34) deaminase TadA -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13975.20 Da        Isoelectric Point: 9.8004

>NTDB_id=650660 L2Z06_RS16380 WP_000836911.1 3408867..3409247(+) (xcpV) [Acinetobacter baumannii strain AB167-VUB]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=650660 L2Z06_RS16380 WP_000836911.1 3408867..3409247(+) (xcpV) [Acinetobacter baumannii strain AB167-VUB]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

100

100

1