Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHB28_RS06095 Genome accession   NZ_CP107981
Coordinates   1371400..1372059 (-) Length   219 a.a.
NCBI ID   WP_327659658.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00356     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1366400..1377059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB28_RS06080 (OHB28_06085) - 1366817..1369045 (-) 2229 WP_328630876.1 CDP-glycerol glycerophosphotransferase family protein -
  OHB28_RS06085 (OHB28_06090) - 1369477..1370763 (-) 1287 WP_328630877.1 MFS transporter -
  OHB28_RS06090 (OHB28_06095) - 1370760..1371299 (-) 540 WP_328630878.1 winged helix-turn-helix domain-containing protein -
  OHB28_RS06095 (OHB28_06100) vraR 1371400..1372059 (-) 660 WP_327659658.1 response regulator transcription factor Regulator
  OHB28_RS06100 (OHB28_06105) - 1372056..1373216 (-) 1161 WP_328635398.1 histidine kinase -
  OHB28_RS06105 (OHB28_06110) - 1373375..1374322 (-) 948 WP_328630879.1 alpha/beta hydrolase -
  OHB28_RS06110 (OHB28_06115) - 1374517..1375548 (-) 1032 WP_328630880.1 NADPH:quinone reductase -
  OHB28_RS06115 (OHB28_06120) - 1375693..1376475 (+) 783 WP_328630881.1 hypothetical protein -
  OHB28_RS06120 (OHB28_06125) - 1376476..1377033 (+) 558 WP_328630882.1 hypothetical protein -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 23690.58 Da        Isoelectric Point: 5.3719

>NTDB_id=650636 OHB28_RS06095 WP_327659658.1 1371400..1372059(-) (vraR) [Streptomyces sp. NBC_00356]
MTEPIRVLVCDDQVLVRTGLVTIIDAQPDLEVVGECGDGKTAVDLAERLRPDVVLMDVRMPVLDGIEATRRLAGSGVRHP
VRVLVVTTFNLDEYVYEALRAGASGFLLKDAPPAQLLLGIRTVATGAALLDPQVTRQLVGRYAARIRPAEDTAPDTPLTP
RELEVLLLIADGLSNSEIAAALLLSQETVKTFVSRILAKLGLRDRVQAVVHAYRRGLVT

Nucleotide


Download         Length: 660 bp        

>NTDB_id=650636 OHB28_RS06095 WP_327659658.1 1371400..1372059(-) (vraR) [Streptomyces sp. NBC_00356]
GTGACCGAGCCGATCCGGGTACTGGTCTGCGACGACCAAGTACTGGTCCGCACCGGCCTGGTGACCATCATCGACGCCCA
GCCCGACCTGGAAGTGGTGGGCGAGTGCGGGGACGGCAAGACGGCCGTCGACCTCGCCGAACGACTGCGCCCTGACGTCG
TGTTGATGGACGTACGCATGCCGGTGCTCGACGGCATCGAGGCGACCCGGCGGCTCGCCGGTTCCGGGGTGCGGCATCCC
GTCAGGGTGCTCGTCGTCACCACGTTCAACCTGGACGAGTACGTCTACGAGGCACTGCGCGCCGGGGCGAGCGGATTCCT
CCTCAAGGACGCGCCGCCGGCCCAACTACTCCTGGGGATAAGGACCGTGGCCACCGGCGCGGCCCTCCTCGACCCCCAGG
TGACACGTCAGCTCGTGGGCAGATACGCCGCCCGGATCCGGCCCGCCGAGGACACCGCGCCCGACACCCCGCTGACACCG
CGCGAACTGGAGGTCCTGCTCCTCATCGCGGACGGCCTGTCCAACAGTGAGATCGCCGCGGCCCTCCTGCTGAGCCAGGA
GACCGTCAAGACCTTCGTCTCCCGCATCCTCGCCAAACTCGGCCTCCGCGACCGCGTCCAGGCGGTCGTCCATGCCTACC
GCCGGGGGCTGGTGACCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(157-212)

Response regulator receiver domain (Response_reg)

(7-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

39.72

97.717

0.388
  degU Bacillus subtilis subsp. subtilis str. 168

37.333

100

0.384