Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHT01_RS34910 Genome accession   NZ_CP107976
Coordinates   8155624..8156289 (+) Length   221 a.a.
NCBI ID   WP_328557099.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00358     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 8150624..8161289
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT01_RS34890 (OHT01_34850) - 8151171..8152487 (+) 1317 WP_328557095.1 geranylgeranyl reductase family protein -
  OHT01_RS34895 (OHT01_34855) - 8152731..8153180 (-) 450 WP_328557096.1 nitroreductase family deazaflavin-dependent oxidoreductase -
  OHT01_RS34900 (OHT01_34860) - 8153408..8154202 (+) 795 WP_328557097.1 TetR/AcrR family transcriptional regulator -
  OHT01_RS34905 (OHT01_34865) - 8154392..8155627 (+) 1236 WP_328557098.1 sensor histidine kinase -
  OHT01_RS34910 (OHT01_34870) vraR 8155624..8156289 (+) 666 WP_328557099.1 response regulator transcription factor Regulator
  OHT01_RS34915 (OHT01_34875) - 8156250..8156564 (-) 315 WP_328557100.1 DUF6332 family protein -
  OHT01_RS34920 (OHT01_34880) - 8156771..8157556 (-) 786 WP_328557101.1 maleylpyruvate isomerase family mycothiol-dependent enzyme -
  OHT01_RS34925 (OHT01_34885) - 8157595..8158761 (-) 1167 WP_328558371.1 MFS transporter -
  OHT01_RS34930 (OHT01_34890) - 8159193..8160638 (-) 1446 WP_328557102.1 glyceraldehyde-3-phosphate dehydrogenase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 23883.62 Da        Isoelectric Point: 4.7051

>NTDB_id=650623 OHT01_RS34910 WP_328557099.1 8155624..8156289(+) (vraR) [Streptomyces sp. NBC_00358]
MIRVLLADDQALVRAGFKALLAAQPDIEVAGEAADGAEALRAVRELRPDVVLMDIRMPVLDGLAATRRITGDPDLGDVKV
VMLTTFELDEYVFEAIRSGASGFLVKDTEPDELLRAVRAVVEGDALLSPGVTRRLISEFAARSKEPESAASLVELTERER
EVMALVGIGLSNDEIARRLVVSPLTAKTHVSRTMVKLGARDRAQLVVLAYESGLVRPGWLG

Nucleotide


Download         Length: 666 bp        

>NTDB_id=650623 OHT01_RS34910 WP_328557099.1 8155624..8156289(+) (vraR) [Streptomyces sp. NBC_00358]
GTGATCCGTGTACTGCTCGCCGACGACCAGGCGCTGGTCAGGGCAGGCTTCAAGGCGCTGCTCGCCGCGCAGCCCGACAT
CGAGGTGGCCGGAGAGGCCGCCGACGGTGCGGAGGCGCTGCGCGCCGTCCGTGAACTGCGCCCCGATGTCGTCCTGATGG
ACATCAGGATGCCCGTGCTGGACGGCCTCGCCGCCACCCGCCGCATCACGGGCGATCCGGATCTCGGGGACGTCAAGGTG
GTCATGCTCACCACCTTCGAACTCGACGAGTACGTCTTCGAGGCCATCCGTTCCGGTGCTTCCGGTTTTCTGGTCAAGGA
CACCGAGCCCGATGAACTGCTGCGTGCGGTAAGGGCGGTGGTCGAGGGTGACGCACTGCTCTCGCCCGGGGTGACTCGGC
GGCTGATCTCCGAGTTCGCGGCCCGTTCCAAGGAGCCCGAGTCCGCCGCGTCCCTCGTCGAACTCACCGAGCGGGAAAGG
GAGGTGATGGCGCTGGTCGGCATCGGCCTGTCGAACGACGAGATCGCCCGCCGTCTCGTTGTCAGCCCGCTCACCGCCAA
GACCCATGTCAGCCGGACGATGGTGAAGCTCGGGGCTCGCGACCGGGCCCAACTGGTCGTGCTCGCCTATGAGTCGGGGC
TGGTGCGACCGGGCTGGCTGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.889

97.738

0.38
  degU Bacillus subtilis subsp. subtilis str. 168

37.333

100

0.38