Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHT01_RS30575 Genome accession   NZ_CP107976
Coordinates   7160287..7160928 (+) Length   213 a.a.
NCBI ID   WP_328556327.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00358     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 7155287..7165928
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT01_RS30555 (OHT01_30520) - 7156034..7156828 (-) 795 WP_328556323.1 transglycosylase SLT domain-containing protein -
  OHT01_RS30560 (OHT01_30525) - 7157133..7158248 (-) 1116 WP_328556324.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase -
  OHT01_RS30565 (OHT01_30530) - 7158245..7158940 (-) 696 WP_328556325.1 SDR family NAD(P)-dependent oxidoreductase -
  OHT01_RS30570 (OHT01_30535) - 7159125..7160294 (+) 1170 WP_328556326.1 GAF domain-containing sensor histidine kinase -
  OHT01_RS30575 (OHT01_30540) vraR 7160287..7160928 (+) 642 WP_328556327.1 response regulator transcription factor Regulator
  OHT01_RS30580 (OHT01_30545) - 7161150..7161395 (+) 246 WP_328556328.1 chaplin -
  OHT01_RS30585 (OHT01_30550) - 7161590..7161829 (+) 240 WP_328556329.1 chaplin -
  OHT01_RS30590 (OHT01_30555) - 7162225..7163013 (-) 789 WP_328556330.1 hypothetical protein -
  OHT01_RS30595 (OHT01_30560) - 7163135..7163926 (+) 792 WP_328556331.1 ABC transporter ATP-binding protein -
  OHT01_RS30600 (OHT01_30565) - 7164022..7164456 (+) 435 WP_328556332.1 NfeD family protein -
  OHT01_RS30605 (OHT01_30570) - 7164587..7165555 (+) 969 WP_328556333.1 SPFH domain-containing protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 22955.26 Da        Isoelectric Point: 5.1490

>NTDB_id=650616 OHT01_RS30575 WP_328556327.1 7160287..7160928(+) (vraR) [Streptomyces sp. NBC_00358]
MADAIKVLLVDDHQVVRRGLRTFLEVQDDIEVVGEASDGAEGVARAEELRPDVVLMDVKMPGMDGIDALRKLRELVNPAR
VLIVTSFTEQRTVVPALRAGAAGYVYKDVDPDALAGAIRSVHAGHIILQAEVAGALLSQEEVNSGQGRGGSLTDREREVL
GLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGIAD

Nucleotide


Download         Length: 642 bp        

>NTDB_id=650616 OHT01_RS30575 WP_328556327.1 7160287..7160928(+) (vraR) [Streptomyces sp. NBC_00358]
GTGGCTGACGCAATCAAGGTGCTGCTCGTCGACGACCACCAGGTCGTCCGCCGGGGACTGCGCACCTTTCTCGAAGTGCA
GGACGACATCGAGGTCGTCGGAGAGGCGTCCGACGGAGCCGAAGGCGTCGCCCGCGCCGAGGAGTTGAGACCCGACGTCG
TCCTCATGGACGTCAAGATGCCGGGAATGGACGGCATCGACGCGCTGCGCAAGCTCCGCGAACTCGTCAACCCCGCACGC
GTGCTGATCGTCACCAGCTTCACCGAGCAGCGCACGGTGGTGCCGGCGCTGCGCGCGGGCGCCGCCGGGTACGTCTACAA
GGACGTGGATCCCGACGCGCTGGCCGGAGCCATCCGCTCGGTCCACGCGGGGCACATCATTCTCCAAGCCGAGGTCGCGG
GCGCCCTGTTGTCCCAGGAAGAGGTCAACTCGGGCCAAGGGAGAGGCGGTTCGCTCACCGACCGGGAGCGCGAGGTGCTC
GGCCTGATCGCGGACGGCCGCTCCAACCGGGAGATCGCCCGTGCCCTCGTCCTCTCCGAGAAGACGGTGAAGACACACGT
TTCGAACATCCTGATGAAGCTCGACCTCGCCGACCGCACCCAGGCCGCGCTCTGGGCGGTACGGCACGGGATCGCGGACT
GA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(151-206)

Response regulator receiver domain (Response_reg)

(7-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.076

99.061

0.437
  degU Bacillus subtilis subsp. subtilis str. 168

38.914

100

0.404