Detailed information    

insolico Bioinformatically predicted

Overview

Name   epdE   Type   Machinery gene
Locus tag   MMOS7_RS09155 Genome accession   NZ_AP011528
Coordinates   1715494..1715712 (-) Length   72 a.a.
NCBI ID   WP_119721361.1    Uniprot ID   A0A2Z5PNQ3
Organism   Methanococcus maripaludis OS7     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1710494..1720712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMOS7_RS09135 (MMOS7_17940) - 1711279..1712565 (-) 1287 WP_119721357.1 phosphoadenosine phosphosulfate reductase family protein -
  MMOS7_RS09140 (MMOS7_17950) recJ 1712615..1714018 (-) 1404 WP_119721358.1 single-stranded-DNA-specific exonuclease RecJ -
  MMOS7_RS09145 (MMOS7_17960) - 1714151..1714792 (+) 642 WP_119721359.1 hypothetical protein -
  MMOS7_RS09150 (MMOS7_17970) - 1714793..1715476 (-) 684 WP_119721360.1 metallophosphoesterase -
  MMOS7_RS09155 (MMOS7_17980) epdE 1715494..1715712 (-) 219 WP_119721361.1 class III signal peptide-containing protein Machinery gene
  MMOS7_RS09160 (MMOS7_17990) MMJJ_RS05685 1715743..1715967 (-) 225 WP_119721362.1 class III signal peptide-containing protein Machinery gene
  MMOS7_RS09170 (MMOS7_18000) - 1716376..1716573 (+) 198 WP_013999971.1 AtpZ/AtpI family protein -
  MMOS7_RS09175 (MMOS7_18010) - 1716591..1717592 (+) 1002 WP_119721363.1 RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5 -
  MMOS7_RS09180 (MMOS7_18020) - 1717610..1717816 (+) 207 WP_011171631.1 ferredoxin family protein -
  MMOS7_RS09185 (MMOS7_18030) - 1717828..1718511 (+) 684 WP_119721364.1 hypothetical protein -
  MMOS7_RS09190 (MMOS7_18040) comE 1718524..1719081 (-) 558 WP_119721365.1 sulfopyruvate decarboxylase subunit beta -
  MMOS7_RS09195 (MMOS7_18050) - 1719083..1719751 (-) 669 WP_119721366.1 HisA/HisF family protein -

Sequence

Protein


Download         Length: 72 a.a.        Molecular weight: 7457.62 Da        Isoelectric Point: 10.1014

>NTDB_id=65061 MMOS7_RS09155 WP_119721361.1 1715494..1715712(-) (epdE) [Methanococcus maripaludis OS7]
MFKKLTSKKGQIAMELGILVMAAVAVAAIAAYFYATNVSNTGKQITNSTNQTTQALADAISDATAKMSNISG

Nucleotide


Download         Length: 219 bp        

>NTDB_id=65061 MMOS7_RS09155 WP_119721361.1 1715494..1715712(-) (epdE) [Methanococcus maripaludis OS7]
ATGTTTAAAAAACTAACATCAAAAAAAGGTCAAATAGCAATGGAACTCGGTATTCTTGTTATGGCAGCAGTTGCAGTTGC
AGCAATAGCAGCATACTTCTACGCAACGAATGTTAGCAACACTGGAAAACAGATTACAAATTCGACAAACCAGACTACAC
AAGCGTTAGCTGATGCAATATCTGATGCTACGGCAAAAATGTCAAATATTTCGGGTTAA

Domains

Predicted by InterproScan.

Class III signal peptide (Class_IIIsignal)

(8-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2Z5PNQ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  epdE Methanococcus maripaludis strain DSM 2067

91.045

93.056

0.847
  MMJJ_RS05685 Methanococcus maripaludis strain DSM 2067

56.338

98.611

0.556

Multiple sequence alignment