Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG996_RS33960 Genome accession   NZ_CP107971
Coordinates   7415012..7415641 (-) Length   209 a.a.
NCBI ID   WP_328550565.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00366     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 7410012..7420641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG996_RS33935 (OG996_33940) - 7410198..7410659 (-) 462 WP_266520162.1 GNAT family N-acetyltransferase -
  OG996_RS33940 (OG996_33945) - 7410754..7411368 (-) 615 WP_328550563.1 gamma carbonic anhydrase family protein -
  OG996_RS33945 (OG996_33950) - 7411438..7411845 (-) 408 WP_266512391.1 RidA family protein -
  OG996_RS33950 (OG996_33955) - 7412007..7412801 (+) 795 WP_266512388.1 nucleotidyltransferase domain-containing protein -
  OG996_RS33955 (OG996_33960) - 7413078..7415006 (+) 1929 WP_328550564.1 FUSC family protein -
  OG996_RS33960 (OG996_33965) vraR 7415012..7415641 (-) 630 WP_328550565.1 response regulator transcription factor Regulator
  OG996_RS33965 (OG996_33970) - 7415638..7416879 (-) 1242 WP_328550566.1 sensor histidine kinase -
  OG996_RS33970 (OG996_33975) - 7417045..7417836 (+) 792 WP_328550567.1 class I SAM-dependent methyltransferase -
  OG996_RS33975 (OG996_33980) - 7417962..7418150 (+) 189 WP_266512375.1 hypothetical protein -
  OG996_RS33980 (OG996_33985) - 7418163..7419116 (-) 954 WP_327666820.1 endonuclease/exonuclease/phosphatase family protein -
  OG996_RS33985 (OG996_33990) - 7419254..7420606 (+) 1353 WP_328550568.1 amidohydrolase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 22206.49 Da        Isoelectric Point: 6.7613

>NTDB_id=650533 OG996_RS33960 WP_328550565.1 7415012..7415641(-) (vraR) [Streptomyces sp. NBC_00366]
MSTAPVRLLLCDDHAVVRAGLRALLSSADGIEVVGEAGSGEEALAMAARLHPDVVLMDLQLGEGMDGVTATRRLTAQGDT
HVLVLTMFDTDADITRAIEAGATGYLLKAERPDELFAAIHSAASGRTALSAPVADRLLAQLRSPRPTLSEREHEILGRLA
QGLGNREIARALFISEATVKTHLGRIYGKLGVETRSGAVAVAKERRLLR

Nucleotide


Download         Length: 630 bp        

>NTDB_id=650533 OG996_RS33960 WP_328550565.1 7415012..7415641(-) (vraR) [Streptomyces sp. NBC_00366]
ATGAGTACGGCGCCCGTCCGTCTCCTGCTGTGCGACGACCACGCGGTGGTACGGGCCGGACTGCGCGCGCTGCTGTCGAG
CGCCGACGGCATCGAGGTGGTCGGCGAGGCGGGCAGCGGCGAGGAGGCGCTCGCCATGGCCGCGCGCCTGCACCCCGACG
TCGTACTGATGGACCTCCAGCTCGGTGAGGGCATGGACGGCGTGACGGCGACCAGGCGGCTGACCGCTCAAGGAGACACG
CACGTCCTGGTGTTGACCATGTTCGACACGGACGCCGACATCACCCGTGCCATCGAGGCGGGCGCCACGGGATACCTGCT
GAAAGCGGAACGCCCGGACGAGCTGTTCGCGGCGATCCACAGCGCCGCGTCCGGCCGTACGGCCCTGTCGGCACCCGTCG
CCGACCGCCTCCTGGCCCAGCTGCGCAGCCCCCGCCCGACTCTCTCCGAACGCGAACACGAGATCCTCGGCCGGCTGGCC
CAGGGCCTCGGCAACCGGGAGATCGCCCGAGCGCTGTTCATCAGCGAGGCCACGGTGAAGACCCATCTCGGCCGGATCTA
CGGCAAGTTGGGAGTGGAGACGCGGTCGGGCGCGGTGGCGGTGGCGAAGGAGCGGCGGTTGCTGAGGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(9-119)

Bacterial regulatory proteins, luxR family (GerE)

(147-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.942

99.522

0.388
  degU Bacillus subtilis subsp. subtilis str. 168

34.862

100

0.364