Detailed information    

insolico Bioinformatically predicted

Overview

Name   epdE   Type   Machinery gene
Locus tag   MMKA1_RS09650 Genome accession   NZ_AP011526
Coordinates   1812086..1812304 (-) Length   72 a.a.
NCBI ID   WP_119721361.1    Uniprot ID   A0A2Z5PNQ3
Organism   Methanococcus maripaludis KA1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1807086..1817304
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMKA1_RS09630 (MMKA1_19130) - 1807922..1809208 (-) 1287 WP_119721357.1 phosphoadenosine phosphosulfate reductase family protein -
  MMKA1_RS09635 (MMKA1_19140) recJ 1809258..1810661 (-) 1404 WP_146778495.1 single-stranded-DNA-specific exonuclease RecJ -
  MMKA1_RS09640 (MMKA1_19150) - 1810794..1811435 (+) 642 WP_146778496.1 hypothetical protein -
  MMKA1_RS09645 (MMKA1_19160) - 1811436..1812068 (-) 633 WP_146778497.1 metallophosphoesterase -
  MMKA1_RS09650 (MMKA1_19170) epdE 1812086..1812304 (-) 219 WP_119721361.1 class III signal peptide-containing protein Machinery gene
  MMKA1_RS09655 (MMKA1_19180) MMJJ_RS05685 1812343..1812552 (-) 210 WP_146778498.1 class III signal peptide-containing protein Machinery gene
  MMKA1_RS09660 (MMKA1_19190) - 1812961..1813158 (+) 198 WP_013999971.1 AtpZ/AtpI family protein -
  MMKA1_RS09665 (MMKA1_19200) - 1813176..1814177 (+) 1002 WP_011171630.1 RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5 -
  MMKA1_RS09670 (MMKA1_19210) - 1814195..1814401 (+) 207 WP_011171631.1 ferredoxin family protein -
  MMKA1_RS09675 (MMKA1_19220) - 1814412..1815095 (+) 684 WP_146778499.1 hypothetical protein -
  MMKA1_RS09680 (MMKA1_19230) comE 1815107..1815664 (-) 558 WP_146778500.1 sulfopyruvate decarboxylase subunit beta -
  MMKA1_RS09685 (MMKA1_19240) - 1815666..1816334 (-) 669 WP_146778501.1 HisA/HisF family protein -

Sequence

Protein


Download         Length: 72 a.a.        Molecular weight: 7457.62 Da        Isoelectric Point: 10.1014

>NTDB_id=65046 MMKA1_RS09650 WP_119721361.1 1812086..1812304(-) (epdE) [Methanococcus maripaludis KA1]
MFKKLTSKKGQIAMELGILVMAAVAVAAIAAYFYATNVSNTGKQITNSTNQTTQALADAISDATAKMSNISG

Nucleotide


Download         Length: 219 bp        

>NTDB_id=65046 MMKA1_RS09650 WP_119721361.1 1812086..1812304(-) (epdE) [Methanococcus maripaludis KA1]
ATGTTTAAAAAACTAACATCAAAAAAAGGTCAAATAGCAATGGAACTCGGTATTCTTGTTATGGCAGCAGTTGCAGTTGC
AGCAATAGCAGCATACTTCTATGCAACGAATGTTAGCAATACTGGAAAACAGATTACAAATTCGACAAATCAAACAACTC
AGGCACTAGCTGATGCAATATCTGATGCTACGGCAAAAATGTCAAATATTTCGGGTTAA

Domains

Predicted by InterproScan.

Class III signal peptide (Class_IIIsignal)

(8-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2Z5PNQ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  epdE Methanococcus maripaludis strain DSM 2067

91.045

93.056

0.847
  MMJJ_RS05685 Methanococcus maripaludis strain DSM 2067

56.338

98.611

0.556

Multiple sequence alignment