Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHS57_RS28500 Genome accession   NZ_CP107968
Coordinates   6370985..6371671 (+) Length   228 a.a.
NCBI ID   WP_328583730.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00370     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6365985..6376671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHS57_RS28480 (OHS57_28490) - 6366347..6366577 (-) 231 WP_041983417.1 hypothetical protein -
  OHS57_RS28485 (OHS57_28495) - 6367026..6369149 (+) 2124 WP_041983415.1 DNA topoisomerase IV subunit B -
  OHS57_RS28490 (OHS57_28500) - 6369289..6369819 (+) 531 WP_041983414.1 DUF1453 family protein -
  OHS57_RS28495 (OHS57_28505) - 6369816..6370988 (+) 1173 WP_041983412.1 histidine kinase -
  OHS57_RS28500 (OHS57_28510) vraR 6370985..6371671 (+) 687 WP_328583730.1 response regulator transcription factor Regulator
  OHS57_RS28505 (OHS57_28515) - 6371768..6372244 (+) 477 WP_041983408.1 DUF485 domain-containing protein -
  OHS57_RS28510 (OHS57_28520) - 6372241..6373833 (+) 1593 WP_041983407.1 cation acetate symporter -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 24155.67 Da        Isoelectric Point: 4.8334

>NTDB_id=650447 OHS57_RS28500 WP_328583730.1 6370985..6371671(+) (vraR) [Streptomyces sp. NBC_00370]
MTERATARVIVADDQAVVREGIVMLLGLLPGIEVVGAARDGEEALALVAELAPDVVLMDLRMPRCDGVEATRRIRADHPG
TQVVVLTTYADDDSLFAALQAGARGYLTKDADGDEIVRAVDDVMAGQAGLAPAVQRRLLDRVTSPPPPTVAAPRELPDGL
TVREAEVLALVADGLSNKEIAGRLHIGGATVKTHINNLFAKTGVRDRAQAVRYAYQQGLIEPPGKTIT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=650447 OHS57_RS28500 WP_328583730.1 6370985..6371671(+) (vraR) [Streptomyces sp. NBC_00370]
ATGACCGAGCGAGCGACAGCCCGGGTGATCGTGGCCGACGACCAGGCCGTGGTCCGCGAGGGCATCGTGATGCTGCTCGG
ACTGCTGCCCGGCATCGAGGTCGTCGGCGCCGCGAGGGACGGTGAGGAAGCCCTCGCGCTCGTCGCCGAACTCGCCCCCG
ACGTCGTCCTGATGGACCTGCGCATGCCGCGCTGCGACGGTGTCGAGGCCACCCGCAGGATCCGCGCCGACCACCCGGGC
ACCCAGGTCGTGGTGCTGACGACCTACGCCGACGACGACTCGCTGTTCGCCGCGCTGCAGGCCGGCGCGCGCGGCTATCT
CACCAAGGACGCGGACGGCGACGAGATCGTCAGGGCCGTGGACGACGTCATGGCGGGACAGGCCGGGCTCGCGCCCGCCG
TCCAGCGCAGACTCCTGGACCGGGTCACCTCCCCGCCGCCGCCCACCGTGGCGGCGCCGAGGGAACTGCCCGACGGACTG
ACCGTGCGCGAGGCCGAGGTGCTGGCGCTGGTCGCCGACGGGCTGTCCAACAAGGAGATCGCCGGACGGCTGCACATCGG
GGGCGCCACGGTGAAGACGCACATCAACAACCTCTTCGCGAAGACCGGGGTACGCGACCGCGCGCAGGCGGTCCGATATG
CCTATCAACAGGGACTCATCGAACCACCAGGGAAAACCATCACCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(159-214)

Response regulator receiver domain (Response_reg)

(9-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

41.204

94.737

0.39
  degU Bacillus subtilis subsp. subtilis str. 168

37.611

99.123

0.373