Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHS57_RS26325 Genome accession   NZ_CP107968
Coordinates   5875527..5876177 (-) Length   216 a.a.
NCBI ID   WP_328583540.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00370     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 5870527..5881177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHS57_RS26305 (OHS57_26320) atpD 5870890..5872344 (+) 1455 WP_041984320.1 F0F1 ATP synthase subunit beta -
  OHS57_RS26310 (OHS57_26325) - 5872468..5872842 (+) 375 WP_041984316.1 F0F1 ATP synthase subunit epsilon -
  OHS57_RS26315 (OHS57_26330) - 5872969..5873415 (+) 447 WP_041984313.1 DUF2550 domain-containing protein -
  OHS57_RS26320 (OHS57_26335) - 5873505..5875334 (-) 1830 WP_041995092.1 glycosyl hydrolase family 18 protein -
  OHS57_RS26325 (OHS57_26340) vraR 5875527..5876177 (-) 651 WP_328583540.1 response regulator transcription factor Regulator
  OHS57_RS26330 (OHS57_26345) - 5876174..5877391 (-) 1218 WP_241778462.1 histidine kinase -
  OHS57_RS26335 (OHS57_26350) - 5877546..5878124 (+) 579 WP_328583541.1 hypothetical protein -
  OHS57_RS26340 (OHS57_26355) - 5878167..5878739 (-) 573 WP_041984308.1 cob(I)yrinic acid a,c-diamide adenosyltransferase -
  OHS57_RS26345 (OHS57_26360) - 5878830..5879600 (-) 771 WP_041984306.1 ABC transporter permease -
  OHS57_RS26350 (OHS57_26365) - 5879613..5880395 (-) 783 WP_328583542.1 ATP-binding cassette domain-containing protein -
  OHS57_RS26355 (OHS57_26370) - 5880477..5881115 (+) 639 WP_041984304.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 23023.52 Da        Isoelectric Point: 4.8384

>NTDB_id=650436 OHS57_RS26325 WP_328583540.1 5875527..5876177(-) (vraR) [Streptomyces sp. NBC_00370]
MTIRVLVADDQAAVRAGIVLILRSADDIEVVGEAADGVEALAMARELRPDLVLMDIQMPRVDGVSATRQVVAERLADVLV
LTTFDLDEYVFGALRAGAAGFLLKNTDARDLLTAVRTVAAGEGLIAPAVTRRLIAEFASPTTGRSGRSADDGVLDALTRR
EREVFFCLGEGLSNGEIARRLSMAEATVKTHVSRLLAKLELRSRVQAAVLAQELGG

Nucleotide


Download         Length: 651 bp        

>NTDB_id=650436 OHS57_RS26325 WP_328583540.1 5875527..5876177(-) (vraR) [Streptomyces sp. NBC_00370]
ATGACGATCAGGGTGCTGGTCGCCGACGACCAGGCGGCGGTGCGCGCGGGCATTGTGCTCATCCTGCGCAGCGCCGACGA
CATCGAGGTGGTCGGTGAGGCCGCCGACGGCGTGGAGGCGCTGGCGATGGCCCGTGAGCTGCGGCCCGATCTGGTGCTGA
TGGACATTCAGATGCCGCGGGTGGACGGCGTTTCGGCGACCCGGCAGGTGGTCGCCGAGCGGTTGGCCGACGTGCTCGTA
CTGACCACGTTCGACCTGGACGAGTACGTCTTCGGGGCGCTGCGCGCGGGGGCCGCGGGGTTCCTGCTGAAGAACACCGA
CGCCCGGGACCTGCTGACGGCCGTACGGACGGTCGCGGCGGGCGAGGGTCTGATCGCGCCGGCCGTGACCCGCCGGCTGA
TCGCCGAGTTCGCCTCGCCCACCACCGGGCGGAGCGGCAGGAGCGCCGATGACGGCGTGCTGGACGCGCTCACGCGCCGG
GAGCGCGAGGTGTTCTTCTGCCTAGGTGAAGGGCTGTCGAACGGGGAGATCGCCAGGCGTCTTTCGATGGCGGAGGCCAC
GGTCAAGACGCATGTGAGCAGGCTGCTGGCCAAGCTGGAGCTGCGCAGCCGGGTGCAAGCGGCCGTACTCGCCCAGGAGT
TGGGTGGCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(156-211)

Response regulator receiver domain (Response_reg)

(5-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

42.925

98.148

0.421
  degU Bacillus subtilis subsp. subtilis str. 168

39.819

100

0.407