Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   OHS57_RS21905 Genome accession   NZ_CP107968
Coordinates   4901430..4902839 (-) Length   469 a.a.
NCBI ID   WP_041986239.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00370     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4896430..4907839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHS57_RS21880 (OHS57_21900) - 4896732..4897433 (-) 702 WP_328583086.1 hypothetical protein -
  OHS57_RS21885 (OHS57_21905) - 4897421..4897957 (-) 537 WP_041986253.1 SigE family RNA polymerase sigma factor -
  OHS57_RS21890 (OHS57_21910) - 4898175..4899095 (-) 921 WP_041986249.1 A/G-specific adenine glycosylase -
  OHS57_RS21895 (OHS57_21915) - 4899327..4900190 (+) 864 WP_328585128.1 hypothetical protein -
  OHS57_RS21900 (OHS57_21920) disA 4900261..4901385 (-) 1125 WP_041986243.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OHS57_RS21905 (OHS57_21925) radA 4901430..4902839 (-) 1410 WP_041986239.1 DNA repair protein RadA Machinery gene
  OHS57_RS21910 (OHS57_21930) - 4902985..4904883 (+) 1899 WP_328583087.1 hypothetical protein -
  OHS57_RS21915 (OHS57_21935) - 4904890..4905627 (-) 738 WP_241778750.1 hypothetical protein -
  OHS57_RS21920 (OHS57_21940) - 4905750..4906682 (+) 933 WP_328583088.1 Ppx/GppA phosphatase family protein -
  OHS57_RS21925 (OHS57_21945) - 4906726..4907703 (+) 978 WP_328583089.1 sugar phosphate isomerase/epimerase -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49470.69 Da        Isoelectric Point: 8.1763

>NTDB_id=650426 OHS57_RS21905 WP_041986239.1 4901430..4902839(-) (radA) [Streptomyces sp. NBC_00370]
MATRTKTAKDRPSYRCTECGWTTVKWLGRCPECQAWGTVEEYGAPAVRTTAAGRVSTAALPIGQVDGRTATARSTGVPEL
DRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAADEGHKTLYVTGEESASQVRLRADRIKAIDDHLYLAAETDLSSVL
GHLDAVKPALLVLDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTILVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGIKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYCATVGGVKLSEPAADLAVALALASAAGDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLSEAHRLGFTHALVPRDPGKIPAGMKVIEVADIGEALRALPRRGRAEAPREDNARR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=650426 OHS57_RS21905 WP_041986239.1 4901430..4902839(-) (radA) [Streptomyces sp. NBC_00370]
ATGGCCACCCGTACGAAGACCGCCAAGGACCGGCCGTCCTACCGCTGCACCGAATGCGGCTGGACGACCGTCAAATGGCT
CGGCCGCTGCCCCGAGTGCCAGGCCTGGGGGACGGTCGAGGAGTACGGCGCGCCCGCCGTGCGGACCACGGCCGCGGGGC
GGGTCTCCACGGCCGCGCTGCCCATCGGCCAGGTCGACGGCCGTACGGCGACGGCGCGCTCGACGGGCGTGCCCGAGCTG
GACCGGGTGCTCGGCGGCGGTCTCGTACCCGGCGCCGTCGTGCTGCTCGCGGGCGAACCGGGCGTGGGCAAGTCGACGCT
GCTGCTGGACGTCGCGGCGAAGGCCGCCGACGAGGGGCACAAGACGCTGTATGTGACCGGCGAGGAGTCGGCCAGCCAGG
TGCGGCTGCGCGCCGACCGGATCAAGGCCATCGACGACCATCTCTATCTCGCGGCCGAGACGGACCTGTCGTCCGTGCTC
GGTCATCTCGACGCCGTCAAACCCGCCCTGCTGGTGCTGGACTCCGTACAGACCGTCGCCTCGCCGGAGATCGACGGCGC
GCCCGGCGGGATGGCGCAGGTCCGCGAGGTCGCGGGGGCGCTGATCCGCGCGTCGAAGGAGCGCGGCATGTCCACGATCC
TGGTGGGCCATGTCACCAAGGACGGCGCCATCGCCGGGCCCCGGCTGCTGGAGCACCTGGTGGACGTGGTGCTGTCGTTC
GAGGGCGACCGGCACGCCCGGCTGCGGCTGGTGCGCGGTATCAAGAACCGGTACGGGGCGACCGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGGATCACCGGACTCGCCGACCCGTCGGGGCTGTTCCTCACCCGGCGTGACGAGCCCGTGCCCG
GCACCTGTCTGACCGTCACGCTCGAAGGCCGCAGGCCGCTGGTTGCCGAGGTGCAGGCGCTGACCGTCGATTCGCAGATC
CCGTCACCCCGGCGCACGACCTCGGGTCTTGAGACCTCCCGGGTGTCGATGATGCTGGCCGTGCTGGAGCAGCGCGGACG
GATCAGTGCGCTGGGCAAACGGGACATCTACTGCGCCACGGTCGGCGGGGTGAAGCTGTCCGAGCCCGCCGCCGATCTCG
CGGTGGCGCTCGCGCTGGCCTCGGCCGCCGGCGACACCCCGCTGCCGAAGAACCTCGTCGCGATCGGCGAGGTGGGGCTC
GCGGGTGAGGTCAGACGGGTCACCGGCGTGCAGCGCAGGCTCTCCGAAGCCCATCGGCTGGGCTTCACCCACGCCCTCGT
ACCGCGCGATCCGGGCAAGATCCCGGCCGGTATGAAGGTCATAGAAGTCGCCGACATAGGTGAAGCGCTGAGGGCCCTGC
CGCGCCGGGGTCGCGCCGAGGCACCACGGGAGGACAACGCGCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(78-222)

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

43.545

97.441

0.424
  radA Streptococcus mitis NCTC 12261

43.545

97.441

0.424
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.929

96.588

0.424
  radA Streptococcus pneumoniae Rx1

43.612

96.802

0.422
  radA Streptococcus pneumoniae TIGR4

43.612

96.802

0.422
  radA Streptococcus pneumoniae D39

43.612

96.802

0.422
  radA Streptococcus pneumoniae R6

43.612

96.802

0.422