Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OHS57_RS17600 Genome accession   NZ_CP107968
Coordinates   3951043..3951642 (-) Length   199 a.a.
NCBI ID   WP_041987921.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00370     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3946043..3956642
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHS57_RS17570 (OHS57_17585) - 3946140..3946631 (+) 492 WP_328582577.1 hypothetical protein -
  OHS57_RS17575 (OHS57_17590) - 3946796..3948178 (+) 1383 WP_328582578.1 hypothetical protein -
  OHS57_RS17580 (OHS57_17595) - 3948175..3948969 (+) 795 WP_328582579.1 endonuclease/exonuclease/phosphatase family protein -
  OHS57_RS17585 (OHS57_17600) - 3948966..3949685 (+) 720 WP_328582580.1 hypothetical protein -
  OHS57_RS17590 (OHS57_17605) - 3949654..3950181 (-) 528 WP_328582581.1 NUDIX hydrolase -
  OHS57_RS17595 (OHS57_17610) - 3950373..3951050 (-) 678 WP_041987923.1 DUF5063 domain-containing protein -
  OHS57_RS17600 (OHS57_17615) recR 3951043..3951642 (-) 600 WP_041987921.1 recombination mediator RecR Machinery gene
  OHS57_RS17605 (OHS57_17620) - 3951786..3952121 (-) 336 WP_078863919.1 YbaB/EbfC family nucleoid-associated protein -
  OHS57_RS17610 (OHS57_17625) - 3952409..3953245 (+) 837 WP_328582582.1 SLATT domain-containing protein -
  OHS57_RS17615 (OHS57_17630) - 3953325..3953975 (-) 651 WP_041987917.1 hypothetical protein -
  OHS57_RS17620 (OHS57_17635) - 3954188..3954919 (-) 732 WP_328582583.1 GntR family transcriptional regulator -
  OHS57_RS17625 (OHS57_17640) - 3955058..3956440 (-) 1383 WP_328582584.1 aspartate aminotransferase family protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21894.23 Da        Isoelectric Point: 5.0023

>NTDB_id=650416 OHS57_RS17600 WP_041987921.1 3951043..3951642(-) (recR) [Streptomyces sp. NBC_00370]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAQTLLEVKDKVRFCAVCGNVAQEERCGICRDPRRDTTV
ICVVEEPKDVVAIERTREFRGKYHVLGGAISPIEGVGPDDLRIRELLTRLADGTVTELILATDPNLEGEATATYLARMIK
PMGLRVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=650416 OHS57_RS17600 WP_041987921.1 3951043..3951642(-) (recR) [Streptomyces sp. NBC_00370]
TTGTACGAAGGCGTGGTTCAGGACCTCATCGACGAACTGGGCAGGCTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTCCAGGCGGAACCCACCGACGTACGGCGCCTTGCCCAGACGCTCCTCGAGGTCAAGGACAAGGTCC
GGTTCTGCGCCGTGTGCGGCAACGTCGCGCAGGAGGAGCGGTGCGGGATCTGCCGGGACCCGCGCCGGGACACCACGGTG
ATCTGTGTGGTGGAGGAGCCGAAGGATGTCGTCGCCATCGAGCGCACCCGTGAGTTCCGCGGGAAGTACCACGTGCTCGG
CGGCGCCATCAGCCCCATCGAGGGCGTCGGCCCCGACGATCTGCGGATCAGGGAGCTGCTGACCCGCCTCGCCGACGGCA
CGGTCACGGAGCTGATTCTGGCGACCGACCCGAATCTGGAGGGCGAGGCCACAGCGACGTACCTCGCCCGCATGATCAAG
CCCATGGGGCTGCGGGTCACCCGCCTGGCCAGTGGTCTCCCCGTGGGGGGCGACCTGGAATATGCCGACGAGGTCACGCT
CGGGCGTGCCTTCGAGGGGAGACGACTTCTCGATGTCTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(38-77)

Toprim domain (Toprim_4)

(80-170)

Helix-hairpin-helix motif (HHH)

(2-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

54.592

98.492

0.538
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.124

97.487

0.528
  recR Streptococcus pneumoniae R6

47.938

97.487

0.467