Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHS57_RS08880 Genome accession   NZ_CP107968
Coordinates   2059388..2060032 (-) Length   214 a.a.
NCBI ID   WP_041991109.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00370     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2054388..2065032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHS57_RS08850 (OHS57_08865) - 2054396..2055163 (-) 768 WP_328581570.1 sulfite exporter TauE/SafE family protein -
  OHS57_RS08855 (OHS57_08870) - 2055224..2056153 (-) 930 WP_041991117.1 SPFH domain-containing protein -
  OHS57_RS08860 (OHS57_08875) - 2056265..2056693 (-) 429 WP_328581571.1 NfeD family protein -
  OHS57_RS08865 (OHS57_08880) - 2056829..2057620 (-) 792 WP_041991113.1 ABC transporter ATP-binding protein -
  OHS57_RS08870 (OHS57_08885) - 2057747..2058538 (+) 792 WP_328581572.1 hypothetical protein -
  OHS57_RS08875 (OHS57_08890) - 2058972..2059247 (-) 276 WP_041991110.1 chaplin -
  OHS57_RS08880 (OHS57_08895) vraR 2059388..2060032 (-) 645 WP_041991109.1 response regulator transcription factor Regulator
  OHS57_RS08885 (OHS57_08900) - 2060025..2061182 (-) 1158 WP_041991108.1 GAF domain-containing sensor histidine kinase -
  OHS57_RS08890 (OHS57_08905) - 2061381..2062079 (+) 699 WP_328581573.1 SDR family oxidoreductase -
  OHS57_RS08895 (OHS57_08910) - 2062076..2063185 (+) 1110 WP_328581574.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase -
  OHS57_RS08900 (OHS57_08915) - 2063457..2064239 (+) 783 WP_041991104.1 transglycosylase SLT domain-containing protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 22964.40 Da        Isoelectric Point: 6.0289

>NTDB_id=650398 OHS57_RS08880 WP_041991109.1 2059388..2060032(-) (vraR) [Streptomyces sp. NBC_00370]
MGDKAIRVLLVDDHQVVRRGLRTFLEVQGDIEVVGEAGDGAEGVAGAEALRPDVVLMDIKMPGMDGIEALRKLRELANPA
KVLIVTSFTEQRTVVPALRAGAAGYVYKDIDPEALADAIRSVHAGHVLLQPEVAGALLAQDDRGSGQGRGTTLTEREREV
LVLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGITG

Nucleotide


Download         Length: 645 bp        

>NTDB_id=650398 OHS57_RS08880 WP_041991109.1 2059388..2060032(-) (vraR) [Streptomyces sp. NBC_00370]
GTGGGTGACAAGGCGATCCGTGTCCTGCTCGTCGACGACCACCAGGTGGTCCGGCGCGGCCTGCGCACATTCCTGGAGGT
CCAGGGCGACATCGAAGTCGTGGGCGAGGCGGGCGACGGCGCCGAAGGCGTCGCCGGCGCGGAGGCGCTGCGGCCCGACG
TCGTCCTGATGGACATCAAGATGCCGGGCATGGACGGCATCGAGGCGCTGCGCAAGCTCCGCGAACTCGCCAACCCGGCG
AAGGTGCTGATCGTCACCAGCTTCACCGAGCAGCGCACGGTGGTCCCGGCGCTGCGGGCCGGCGCCGCGGGATACGTATA
CAAGGACATCGACCCCGAAGCGCTCGCCGACGCCATCCGCTCCGTACACGCGGGCCACGTACTGCTCCAGCCCGAGGTCG
CGGGCGCCCTGCTGGCCCAGGACGACCGGGGGAGCGGCCAGGGGCGCGGCACGACACTGACCGAGCGGGAACGCGAGGTA
CTGGTCCTGATCGCCGACGGCCGCTCCAACCGGGAGATCGCCCGCGCCCTCGTTCTCTCCGAGAAGACGGTCAAGACCCA
CGTTTCGAACATCCTGATGAAACTCGATCTCGCCGACCGGACCCAGGCGGCGCTGTGGGCCGTCCGACATGGGATAACCG
GCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(8-120)

Bacterial regulatory proteins, luxR family (GerE)

(152-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

45.933

97.664

0.449
  degU Bacillus subtilis subsp. subtilis str. 168

39.367

100

0.407