Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   L2Z13_RS19385 Genome accession   NZ_CP091361
Coordinates   2627229..2628089 (-) Length   286 a.a.
NCBI ID   WP_057078044.1    Uniprot ID   A0A8I1ZA09
Organism   Acinetobacter baumannii strain AB177-VUB     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 2628574..2629664 2627229..2628089 flank 485


Gene organization within MGE regions


Location: 2627229..2629664
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Z13_RS19385 pilD 2627229..2628089 (-) 861 WP_057078044.1 A24 family peptidase Machinery gene
  L2Z13_RS12695 (L2Z13_12695) - 2628089..2628502 (-) 414 Protein_2473 type II secretion system F family protein -
  L2Z13_RS12700 (L2Z13_12700) - 2628574..2629664 (+) 1091 WP_085940413.1 IS4-like element ISAba1 family transposase -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32126.53 Da        Isoelectric Point: 7.1041

>NTDB_id=650382 L2Z13_RS19385 WP_057078044.1 2627229..2628089(-) (pilD) [Acinetobacter baumannii strain AB177-VUB]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLMLRGKCGHCQHPISIRYPAVELLTMLCSLVVVMVFGPTIQMFFGLVLTWVLIALTFIDFDTQLLPDR
FTLTLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIIYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=650382 L2Z13_RS19385 WP_057078044.1 2627229..2628089(-) (pilD) [Acinetobacter baumannii strain AB177-VUB]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGTTACTCA
ATCCTGAGCAACCGATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTATGTTAAGAGGAAAGTGTGGCCATTGCCAGCACCCGATTAG
TATTCGCTATCCAGCCGTCGAACTACTCACCATGCTATGTTCATTAGTAGTCGTCATGGTGTTTGGTCCAACCATACAAA
TGTTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTAACTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTATCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGTATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(22-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

97.552

100

0.976
  pilD Acinetobacter nosocomialis M2

97.203

100

0.972
  pilD Vibrio cholerae strain A1552

53.875

94.755

0.51
  pilD Vibrio campbellii strain DS40M4

51.661

94.755

0.49
  pilD Neisseria gonorrhoeae MS11

46.591

92.308

0.43