Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   L2Z13_RS09160 Genome accession   NZ_CP091361
Coordinates   1886187..1886828 (-) Length   213 a.a.
NCBI ID   WP_000201227.1    Uniprot ID   A0A009HSE6
Organism   Acinetobacter baumannii strain AB177-VUB     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1881187..1891828
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Z13_RS09140 (L2Z13_09140) aroK 1882098..1882667 (-) 570 WP_000643712.1 shikimate kinase AroK -
  L2Z13_RS09145 (L2Z13_09145) pilQ 1882679..1884844 (-) 2166 WP_029424115.1 type IV pilus secretin PilQ family protein Machinery gene
  L2Z13_RS09150 (L2Z13_09150) pilP 1884912..1885439 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  L2Z13_RS09155 (L2Z13_09155) pilO 1885450..1886190 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  L2Z13_RS09160 (L2Z13_09160) pilN 1886187..1886828 (-) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  L2Z13_RS09165 (L2Z13_09165) pilM 1886828..1887886 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  L2Z13_RS09170 (L2Z13_09170) ponA 1888048..1890603 (+) 2556 WP_000736677.1 penicillin-binding protein PBP1a -
  L2Z13_RS09175 (L2Z13_09175) - 1890621..1891445 (-) 825 WP_086221410.1 putative RNA methyltransferase -
  L2Z13_RS09180 (L2Z13_09180) - 1891448..1891780 (-) 333 WP_000169602.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24019.35 Da        Isoelectric Point: 5.3968

>NTDB_id=650359 L2Z13_RS09160 WP_000201227.1 1886187..1886828(-) (pilN) [Acinetobacter baumannii strain AB177-VUB]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPSAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVTTTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=650359 L2Z13_RS09160 WP_000201227.1 1886187..1886828(-) (pilN) [Acinetobacter baumannii strain AB177-VUB]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATTCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCATCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAAAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGACCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009HSE6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

100

100

1
  comN Acinetobacter baylyi ADP1

71.905

98.592

0.709